google-deepmind alphafold issues

google-deepmind / alphafold

Open source code for AlphaFold.

Apache License 2.0

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issues

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How do I know when to update my local database?

#918 zrt2002 opened 6 months ago
0
--model_preset=multimer: command not found

#917 apal6 opened 6 months ago
0
Fix resolution field in mmcif_parsing

#916 ljarosch closed 5 months ago
1
AlphaFold uses the wrong resolution field during structure parsing

#915 ljarosch closed 5 months ago
2
Fatal Python error: Segmentation fault

#914 ghost opened 6 months ago
1
Use `/usr/bin/env` for bash shebang

#913 abhillman opened 6 months ago
1
Test

#912 lokinegalur closed 6 months ago
2
Test

#911 lokinegalur closed 6 months ago
2
The proper way to find the maximum subbatch_size?

#910 estrozi opened 6 months ago
0
ValueError: Could not find CIFs

#909 leonhardt913 opened 6 months ago
3
Does it cost money to download the dataset or not?

#908 covalspace closed 6 months ago
0
Getting more than 25 predicted models for multimer mode

#907 varunmc92 closed 6 months ago
4
prediction results are not consistent

#906 lijing28101 opened 7 months ago
2
error whole running alphafold google colab

#905 Dhire123 opened 7 months ago
2
CONDA will not install

#904 mirpeter opened 7 months ago
1
Failing to install; Colab notebook version

#903 snorthman opened 7 months ago
1
Run multimer with a "single receptor" and "multiple partners"

#902 Cucco23 opened 7 months ago
5
Downloading mmCIF files problem

#901 mavino closed 7 months ago
2
404 Client Error for http+docker://localhost/v1.44/images/create?tag=latest&fromImage=alphafold: Not Found ("pull access denied for alphafold, repository does not exist or may require 'docker login': denied: requested access to the resource is denied")

#900 vatsimanos opened 7 months ago
9
JAX 0.4.14 jaxlib cudnn error - non-docker installation

#899 AssmannG opened 7 months ago
2
Updated Dockerfile

#898 emisaghi opened 7 months ago
1
` HHSearch failed` with no `stdout` or `stderr` output

#897 GentleInfant opened 7 months ago
5
bash redirection error

#896 GentleInfant closed 7 months ago
1
HMMER MSAs aren't saved and repeated when running with --use_precomputed_msas=True

#895 apelin20 opened 8 months ago
10
Attention docstring missing head dimension for arguments mask and nonbatched_bias

#894 louis-rf opened 8 months ago
0
Corrected Attention docstring

#893 louis-rf opened 8 months ago
1
Calculation of ipTM score for multimers greater than a dimer

#892 loggy01 opened 8 months ago
0
RMSD95 Definition

#891 jwohlwend opened 8 months ago
0
Missing function in docker build

#890 forcefield opened 8 months ago
0
Add codespell config + workflow to detect new typos and make it fix some typos

#889 yarikoptic opened 8 months ago
1
HHblits query is running time too long!

#888 JLHU2021 opened 8 months ago
3
Can I debug the code in the pycharm?

#887 Lili-irtyd opened 8 months ago
1
docker.errors.APIError: 500 Server Error for http+docker://localhost/v1.43/containers/ee2565cd6294bdf23537e9fb81814d89cb240f8c02b23f24a0926e3c66b44aea/start: Internal Server Error ("could not select device driver "nvidia" with capabilities: [[gpu]]")

#886 khanhtomiu opened 8 months ago
2
ImportError: cannot import name 'SCOPData' from 'Bio.Data'

#885 lx19930 opened 8 months ago
6
alphafold outputs only have msas

#884 zsxzs opened 9 months ago
4
AlphaFold Colab crash at 'Search genetic databases' stage: Keras Zeros initializer fault...

#883 jfbazan closed 8 months ago
2
AlphaFold Stuck at hhblits Step on Cluster Compute Node

#882 Harryyang21 opened 9 months ago
0
Install third-party software stalls at 17%

#881 eweyer opened 9 months ago
1
Resource not found: pdb70_from_mmcif_200401.tar.gz

#880 YaxuanLi-cn closed 8 months ago
1
SymbolAlreadyExposedError: Symbol Ones is already exposed as ()

#879 Saddy48 closed 8 months ago
1
Notebook - Cell 4 "Making Prediction" - SymbolAlreadyExposedError

#878 Sabi89129 closed 8 months ago
4
HOW to change MSA

#877 GodPCWANG opened 9 months ago
3
Error On Section 4, Symbol Zeros is already exposed as ()

#876 wilEd22 closed 8 months ago
5
SymbolAlreadyExposedError

#875 QweQweQwe300 closed 8 months ago
16
Linux ARM64 an officially supported platform ?

#874 jflucier opened 9 months ago
0
No GPU/TPU found

#873 zhoudreames closed 9 months ago
5
Failed to find source directory "/home/gpux1/alphafold/uniref90" to mount in Docker container.

#872 Lili-irtyd opened 10 months ago
6
400 Client Error: Bad Request for url: http+docker://localhost/v1.43/containers/create

#871 duanjingqi opened 10 months ago
0
added google colab badge to notebook

#870 isayahc opened 10 months ago
0
added google colab badge to notebook

#869 isayahc closed 10 months ago
1

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