Open Biscuite-wzy opened 2 years ago
Hello, I am using gffread (v0.12.7) to extract cds sequences based on a gff file. When I run the command "gffread Atum.gff3 -g Atum_genome.fa -x cds.fa”, I met a error, as follows. I do not know the reason. Can you help me? Thanks a lot.
gffread Atum.gff3 -g Atum_genome.fa -x cds.fa FASTA index file Atum_genome.fa.fai created. Error in `gffread': double free or corruption (!prev): 0x000055b181794a50 ======= Backtrace: ========= /lib64/libc.so.6(+0x81489)[0x7fbf7d516489] gffread(+0x28a4d)[0x55b17fdc4a4d] gffread(+0x29e4a)[0x55b17fdc5e4a] gffread(+0x2e4ad)[0x55b17fdca4ad] gffread(+0x4333)[0x55b17fda0333] /lib64/libc.so.6(__libc_start_main+0xf5)[0x7fbf7d4b73d5] gffread(+0x58c5)[0x55b17fda18c5] ======= Memory map: ======== 55b17fd9c000-55b17fd9f000 r--p 00000000 fd:02 3487422421 /home/ly/miniconda3/envs/gffread/bin/gffread 55b17fd9f000-55b17fdd0000 r-xp 00003000 fd:02 3487422421 /home/ly/miniconda3/envs/gffread/bin/gffread ..............
Hello, I am using gffread (v0.12.7) to extract cds sequences based on a gff file. When I run the command "gffread Atum.gff3 -g Atum_genome.fa -x cds.fa”, I met a error, as follows. I do not know the reason. Can you help me? Thanks a lot.
gffread Atum.gff3 -g Atum_genome.fa -x cds.fa FASTA index file Atum_genome.fa.fai created. Error in `gffread': double free or corruption (!prev): 0x000055b181794a50 ======= Backtrace: ========= /lib64/libc.so.6(+0x81489)[0x7fbf7d516489] gffread(+0x28a4d)[0x55b17fdc4a4d] gffread(+0x29e4a)[0x55b17fdc5e4a] gffread(+0x2e4ad)[0x55b17fdca4ad] gffread(+0x4333)[0x55b17fda0333] /lib64/libc.so.6(__libc_start_main+0xf5)[0x7fbf7d4b73d5] gffread(+0x58c5)[0x55b17fda18c5] ======= Memory map: ======== 55b17fd9c000-55b17fd9f000 r--p 00000000 fd:02 3487422421 /home/ly/miniconda3/envs/gffread/bin/gffread 55b17fd9f000-55b17fdd0000 r-xp 00003000 fd:02 3487422421 /home/ly/miniconda3/envs/gffread/bin/gffread ..............