green-striped-gecko
commented
1 year ago Hi Andrii,
based on the error message the package installation fails because some other packages failed to install. you need to crawl through them in order.
the first package that fails is terra, so please check howto install terra on ubuntu (i recall i had some problems with terra on redhat as well). it needs to compile and has also gdal as dependency which often fails to install. check the help sites for terra. test if install via library(terra).
then try to reinstall dartr. if there are still other packages that fail, then try to install them with their help pages.
the good news all the packages listed down from terra (gdistance, raster, popgenreport) depend on terra, hence it may be the only package that causes problems but hard to predict,
hope that helps, Bernd
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Bernd Gruber
Professor Spatial and Ecological Modelling
Institute for Applied Ecology
P 02 620638<tel:02%2062063824>04 E @.**@.>
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University of Canberra, ACT 2617
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On 20 Oct 2022, at 20:35, AndriiTarieiev @.***> wrote:
Dear developers,
I tried to install dartR using R 3.6.3, 4.0.3, 4.1.0, and 4.1.1 on HPC (SCientific Linux7.9), and also locally using R 4.2.0 and 4.2.1 on Windows 10 and 11, and Ubuntu 20.04 and 22.04. directly from R, from Github, and from Bioconductor. In all the cases installation fails with the following error message:
ERROR: dependencies ‘PopGenReport’, ‘raster’ are not available for package ‘dartR’
- removing ... Warnings: 1: In i.p(...) : installation of package ‘terra’ had non-zero exit status 2: In i.p(...) : installation of package ‘raster’ had non-zero exit status 3: In i.p(...) : installation of package ‘gdistance’ had non-zero exit status 4: In i.p(...) : installation of package ‘dismo’ had non-zero exit status 5: In i.p(...) : installation of package ‘PopGenReport’ had non-zero exit status 6: In i.p(...) : installation of package ‘/tmp/RtmpfOADMG/file2307c514e5044/dartR_2.1.4.tar.gz’ had non-zero exit status
I would appreciate it very much if you are able to suggest how it can be fixed. Thank you.
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mijangos81
AndriiTarieiev
Dear developers,
I tried to install dartR using R 3.6.3, 4.0.3, 4.1.0, and 4.1.1 on HPC (SCientific Linux7.9), and also locally using R 4.2.0 and 4.2.1 on Windows 10 and 11, and Ubuntu 20.04 and 22.04. directly from R, from Github, and from Bioconductor. In all the cases installation fails with the following error message:
ERROR: dependencies ‘PopGenReport’, ‘raster’ are not available for package ‘dartR’
I would appreciate it very much if you are able to suggest how it can be fixed. Thank you.