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greenelab / mpmp

Multimodal Pan-cancer Mutation Prediction
BSD 3-Clause "New" or "Revised" License
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Get final models (coefficients) for all data types #93

Closed jjc2718 closed 2 years ago

jjc2718 commented 2 years ago

As part of the published version of the paper, we made available trained models for all the data types we looked at, for all of the genes from our "merged" cancer gene set. (Before, after the first revision, we were just doing this for gene expression - see PR #89).

This PR just generalizes 07_train_final_classifiers/collect_full_models.ipynb to save models (coefficients and parameters) for all data types rather than just expression, and extends 07_train_final_classifiers/scripts/run_all_genes.sh to also run for all data types.

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jjc2718 commented 2 years ago

No rush on this, I know you're out this week/will probably be busy when you return