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greenelab / snorkeling

Extracting biomedical relationships from literature with Snorkel 🏊
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Expert snorkelers: cataloging related projects and snorkels #12

Open dhimmel opened 7 years ago

dhimmel commented 7 years ago

This issue is a place to note other snorkel projects. The hope is that we can compile a list of experts on specific domains to reach out to later. Furthermore, we can make sure we're not duplicating efforts.

dhimmel commented 7 years ago

According to @thodrek, @kuleshov (Volodymyr Kuleshov) has been working on extracting GWAS associations from the literature using Snorkel. @kuleshev, feel free to link to your related content (e.g. repos or manuscripts).

dhimmel commented 7 years ago

@cgreene mentioned he ran into @edoughty (Emily Mallory) at PSB 2017. According to her abstract:

We developed entity extractors for genes, drugs, and diseases; and relationship extractors for gene-gene, gene-disease, and gene-drug relationships. We evaluated the gene-gene work previously with a corpus of articles from three PLOS journals, and we are currently evaluating the other two relationship extractors on a corpus from PubMed Central.

kuleshov commented 7 years ago

Yes, here is the repo: https://github.com/kuleshov/gwasdb/