search

gregbellan / Stabl

BSD 3-Clause Clear License
49 stars 15 forks source link

groupyr and numpy #1

Closed sung closed 11 months ago

sung commented 1 year ago

I followed your instruction manual, but it seems the required version of groupyr (0.3.2) conflicts with the version of numpy you demanded, e.g.

pip install numpy==1.23.2
...
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
groupyr 0.3.2 requires numpy==1.21.5, but you have numpy 1.23.2 which is incompatible.

Any thought?

sung commented 1 year ago

I followed your instruction manual, but it seems the required version of groupyr (0.3.2) conflicts with the version of numpy you demanded, e.g.

pip install numpy==1.23.2
...
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
groupyr 0.3.2 requires numpy==1.21.5, but you have numpy 1.23.2 which is incompatible.

Any thought?

BTW, Stabl was installed by the following command: pip install git+https://github.com/gregbellan/Stabl.git

gbellan commented 1 year ago

That's normal ! the library should work anyway ;)

sung commented 1 year ago

Then, why not remove the dependency of using numpy 1.23.2 thought the document and the repo?

That's normal ! the library should work anyway ;)

xavdurand commented 1 year ago

Unfortunately, some of the features that we are using are not in the numpy version numpy==1.21.5, but in older version.

The groupyr package used to implement Sparse Group Lasso and Sparse Group Logit Lasso fixed its version of numpy to numpy==1.21.5 even if it is working well with older version. So, we just updated the numpy version to numpy==1.23.2 because it was our setup.

Note: There could be an issue with numba if the numpy version is too old, depending on the version of numba.

xavdurand commented 11 months ago

We have published a light-weight version of Stabl with the release v1.0.0-lw. Please refer to this version if you have issues with Julia and Groupyr installation. I also close this issue, as it is resolved by the light-weight release ✨