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grenaud / deML

Maximum likelihood demultiplexing
GNU General Public License v3.0
46 stars 13 forks source link

Installation error when building the source code #3

Closed chang-wang closed 6 years ago

chang-wang commented 7 years ago

Hi,

My colleagues got some error messages when he helped me to install deML on the cluster. He told me there were no functions returnOpenFileDescriptors and returnOpenFileDescriptorsMax declared when he tried to build the source code. Here are the error messages he attached to me:

deML.cpp: In function ‘void checkFD()’: deML.cpp:587:43: error: ‘returnOpenFileDescriptors’ was not declared in this scope int rofd = returnOpenFileDescriptors(); ^ deML.cpp:588:46: error: ‘returnOpenFileDescriptorsMax’ was not declared in this scope int rofdM = returnOpenFileDescriptorsMax();

We couldn't find information regarding this issue online. Could you please help me to take a look at it? Thanks a lot!

grenaud commented 7 years ago

Dear Chang, Thank you for your interest in our work! I checked your problem, it seems that when you do "git clone --recursive" followed by make, it does not fetch the latest version of libgab. However, when you do "git clone" followed by make, then the correct version of libgab is used. I have no idea why. If you can find an explanation, please let me know.

In the meantime, I changed the readme from: 2. Do a "git clone --recursive https://github.com/grenaud/deML.git" to 2. Do a "git clone https://github.com/grenaud/deML.git"

please let me know if this solves the problem on your end.

chang-wang commented 7 years ago

Thanks a lot! Problem solved~