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griffithlab
/
civicpy
A python interface for the CIViC db application
MIT License
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5
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Support reference build NCBI36/hg18
#98
susannasiebert
closed
4 years ago
0
A few variant coordinate search improvements
#97
susannasiebert
closed
4 years ago
0
Implement variant search by HGVS expression
#96
susannasiebert
closed
4 years ago
0
Throw fatal error when using `-` as the alt or ref in a coordinate query
#95
susannasiebert
closed
4 years ago
1
Add deprecation warnings to civic.get_all_x_ids methods
#94
susannasiebert
closed
4 years ago
1
speed up tests
#93
ahwagner
opened
4 years ago
1
Add additional evidence/assertion fields to the CIViC consequence annotation
#92
susannasiebert
closed
4 years ago
0
Make CIViCpy Python >=3.5 compatible
#91
susannasiebert
closed
4 years ago
2
Deprecate the `get_all_x_ids` methods
#90
susannasiebert
closed
4 years ago
0
Improve tests coverage
#89
susannasiebert
closed
4 years ago
1
Add more fields to the VCF annotation output
#88
susannasiebert
closed
4 years ago
0
Add command to annotate an existing VCF with CIViC variants
#87
susannasiebert
closed
4 years ago
0
Patch for vcf_annotator2 to sanitize coordinate inputs
#86
ahwagner
closed
4 years ago
1
merge master to 1.0 ahead of 1.0.1 release
#85
ahwagner
closed
4 years ago
0
Use '*' as a wildcard for coordinate exact searches
#84
susannasiebert
closed
4 years ago
0
Download test pkl file from symlink
#83
susannasiebert
closed
4 years ago
0
Documentation patch
#82
ahwagner
closed
4 years ago
0
Fix bug in VCF coordinate retrieval for complex indels
#81
susannasiebert
closed
4 years ago
3
bump version to 1.0.0
#80
ahwagner
closed
4 years ago
0
Fix bugs that prevent generation of valid VCF
#79
susannasiebert
closed
4 years ago
0
Allow users to mistakenly use '-' for empty ref/alt
#78
ahwagner
closed
4 years ago
0
Add ref and build as optional parameters to CoordinateQuery
#77
susannasiebert
closed
4 years ago
0
Various bugfixes to coordinate search
#76
susannasiebert
closed
4 years ago
0
Remove pubchem_id field on Drug and replace with ncit_id
#75
susannasiebert
closed
4 years ago
0
No remote queries option
#74
ahwagner
opened
4 years ago
1
Add new variant search capabilities
#73
susannasiebert
closed
4 years ago
1
Gene provenance
#72
ahwagner
closed
4 years ago
0
add prov / lifecycle documentation
#71
ahwagner
closed
4 years ago
1
Partial support for issue 65
#70
ahwagner
closed
4 years ago
4
civicpy-specific endpoints on CIViC production
#69
ahwagner
closed
3 years ago
2
Documentation of coordinate search
#68
ahwagner
closed
4 years ago
0
Mock tests for update behavior
#67
ahwagner
closed
4 years ago
0
closes #59
#66
ahwagner
closed
4 years ago
1
add provenance information
#65
ahwagner
closed
4 years ago
2
run erro
#64
fanyucai1
closed
4 years ago
8
Add an extras_require test section and move all test-only dependencies there
#63
susannasiebert
closed
4 years ago
0
Add testing for example Jupyter notebooks
#62
susannasiebert
closed
4 years ago
1
Add a basic example Jupyter notenbook
#61
susannasiebert
closed
4 years ago
1
Update documentation
#60
ahwagner
closed
4 years ago
2
update_cache and load_cache behavior
#59
ahwagner
closed
4 years ago
0
Separate out requirements in setup.py
#58
ahwagner
closed
4 years ago
0
Create figure of code example
#57
ahwagner
closed
4 years ago
0
Consider support for all active versions of Python 3
#56
ahwagner
closed
4 years ago
0
Add reference build check to the VCFWriter
#55
susannasiebert
closed
4 years ago
0
Update master remote cache pkl file path
#54
susannasiebert
closed
4 years ago
0
VCFWriter improvements
#53
susannasiebert
closed
4 years ago
0
closes #45
#52
ahwagner
closed
4 years ago
0
Cleanup
#51
ahwagner
closed
5 years ago
0
add support for revisions and projections
#50
ahwagner
opened
5 years ago
1
closes #38
#49
ahwagner
closed
5 years ago
0
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