search

griffithlab / regtools

Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.
https://regtools.readthedocs.org
MIT License
121 stars 26 forks source link

Unrecognized strandness argument! #185

Open hsymoon opened 6 months ago

hsymoon commented 6 months ago

Hi Developers,

I have smartseq2 data which is un-stranded, I use -s XS , but "?" appeared in my result. I read your comments before, THEN I use -s 0 , regtools said "Unrecognized strandness argument!". I definitely sure my parameter is number 0 not the letter O.
Thank you .

yfarjoun commented 4 months ago

check your version. different versions of regtool required different values for this argument....