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gvlproject / gvl.ansible.playbook

Playbook for building the Genomics Virtual Laboratory
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genomespace module not installed on current filesystem build #67

Closed Slugger70 closed 7 years ago

Slugger70 commented 7 years ago

Genomespace module not loaded. python-genomespaceclient needs to be included in requirements file. Once done galaxy needs to be restarted to load the python module

nuwang commented 7 years ago

It's installed now, but running the tool results in: "/mnt/galaxy/galaxy-app/.venv/bin/python: can't open file 'genomespace_importer.py': [Errno 2] No such file or directory"

jessicachung commented 7 years ago

In /mnt/galaxy/galaxy-app/tools/genomespace/genomespace_importer.xml, line 6 needs to be changed to:

        $__root_dir__/.venv/bin/python $__root_dir__/tools/genomespace/genomespace_importer.py

Once changed, genomespace import and export both work on Galaxy for gvl 4.2