Example projects

[santina]

Hi @DCGenomics, Do you have a list of project titles and maybe the description of them from previous hackathons you were involved in? We would like to see what a successful project look like and provide some examples to our potential team leaders. Thanks!

[DCGenomics]

Sure! I can send 'em over on Sunday.

Also, many one line descriptions can be seen on github.com/NCBI-hackathons

Cheers!

Ben

On Fri, Apr 22, 2016 at 2:25 PM, Santina Lin notifications@github.com wrote:

Hi @DCGenomics https://github.com/DCGenomics, Do you have a list of project titles and maybe the description of them from previous hackathons you were involved in? We would like to see what a successful project look like and provide some examples to our potential team leaders. Thanks!

— You are receiving this because you were mentioned. Reply to this email directly or view it on GitHub https://github.com/hackseq/October_2016/issues/22

What have you done today to make the world a better place?

[santina]

@DCGenomics Thank you! Really appreciate the prompt response :)

[DCGenomics]

Here are some initial project titles.

Some of them evolved into the ones you see on the NCBI-hackathons github repos.

Prediction of immunogenicity from cancer and bacterial peptides Deriving Structural Variants from RNA-seq Data Using GATK Building a pipeline for determining RNA sequence variability in neurons from any species Small molecule docking in solved protein structure space. Effects of network bifurcation. Integration of ClinVar/dbGaP data into protein structure interfaces Genome Wide View of RNA-seq data Statistical Network Analysis of Variants Automated Epitope Analysis from TCR clones Verification of Structural Variant Data with Information from Public Datasets Building a pipeline network analysis and display of SNPs SRA2R -- building a BioConductor module to import data from SRA Looking at RNAseq network pertubations in specific carcinomas Deriving Quaternary Interactions of Clinically Relevant Mutations from Protein Structure Creating an interface for metadata sorting Finding all quaternary structural associations of ClinVar variants Homogenous mapping of 50,101 RNAseq runs to the human genome Building a pipeline for automated upload and comparison of RNAseq expression data; establishing a standard format for this process Enabling easy and rapid RNAseq analysis from public datasets: Building a GUI for the Sequence Read Archive Metadata Normalization for RNAseq Analysis. Automatic Scanning of NGS Datasets for Disease Relevant Variants A Pushbutton Tool for .vcf Filtering Molecular Matching in Myeloma: Combining RNAseq Data with Drug Response Profiles* Automated Genome Selection from Complex Phenotypic Data in dbGaP Using SEQR (PSSM BLAST) to Check for Gross (Domain Level) Differences in RNAseq Datasets Push Button Genomics Analysis with BLAST Building an Educational Environment to Teach Genomic Mapping and Ultrafast BLAST; .sam Format Comparison Building an Indexing, Distribution and Updating System for Bioinformatics Virtual Machines*

Cheers!

Ben

On Fri, Apr 22, 2016 at 10:23 PM, Santina Lin notifications@github.com wrote:

@DCGenomics https://github.com/DCGenomics Thank you! Really appreciate the prompt response :)

— You are receiving this because you were mentioned. Reply to this email directly or view it on GitHub https://github.com/hackseq/October_2016/issues/22#issuecomment-213652008

What have you done today to make the world a better place?