haesleinhuepf / git-bob-bioimage-analysis-example

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Nuclei segmentation #64

Open haesleinhuepf opened 1 month ago

haesleinhuepf commented 1 month ago

This is human_mitosis.png:

human_mitosis

I would like to segment and label the bright nuclei in it, using the Voronoi-Otsu-Labeling algorithm. The resulting label image should be saved as RGB .png file. Please write a jupyter notebook for this.

git-bob try to do this.

github-actions[bot] commented 1 month ago

This message was generated by git-bob (version: 0.8.2, model: gpt-4o-2024-08-06, log), an experimental AI-based assistant. It can make mistakes and has limitations. Check its messages carefully.

A new Jupyter notebook named nuclei_segmentation.ipynb was created to perform segmentation and labeling of nuclei using the Voronoi-Otsu-Labeling algorithm. Additionally, an image from the URL https://github.com/user-attachments/assets/c1bf94c5-fe80-4ff9-a46e-d4d9cb9f276f was downloaded and saved as data/human_mitosis.png. Image