haesleinhuepf / git-bob-playground

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Implemented nucleus segmentation using Voronoi-Otsu-Labeling in a Jupyter Notebook. #33

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github-actions[bot] commented 1 month ago

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In response to issue #32, implemented a Jupyter Notebook notebook_nuclei_segmentation.ipynb for segmenting nuclei in microscopy images using the napari-segment-blobs-and-things-with-membranes library. The notebook guides through image loading, segmentation via Voronoi-Otsu-Labeling, and visualization using stackview, alongside converting and saving the segmented results as an RGB image for enhanced visibility. Additionally, the image file human_mitosis_small.jpg was added.

closes #32