issues
search
hahnlab
/
CAFE5
Version 5 of the CAFE phylogenetics software
Other
109
stars
22
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
CAFE 5, installation fail
#190
pcampiteli
opened
3 days ago
1
Cafe error
#189
Ram0619
opened
6 days ago
0
Name of the software: "CAFE5", "CAFE 5", or just "CAFE"?
#187
heavywatal
closed
2 weeks ago
0
result_summary.tsv
#185
TCHeaven
closed
1 month ago
0
How to determine gamma value (k) in CAFE5
#183
LeoVincenzi
closed
1 month ago
0
Cafe5 hanging with no output
#181
ryvan1021
opened
3 months ago
3
no such file or directory: ./configure
#180
miaoxm2
opened
3 months ago
1
Trying to simulate leaf family size that was not included in error model
#179
timeforthemoonnight
opened
4 months ago
0
Need help finding a summary output file
#173
rosspdu
closed
5 months ago
1
RE: Signifcant but have "+0" change
#172
Malabady
closed
5 months ago
0
Species is missing in output
#170
chenym1
closed
3 months ago
3
After multiple cycles of deleting families, rerunning cafe5 still reports errors. And some erroes with lowering the lambda value ( 0.0001 )
#169
MYP0130
closed
5 months ago
2
Problem on using CAFE_fig to visualise the output of CAFE5
#168
YuzhouGong
opened
6 months ago
1
Missing Gene Families
#165
Paul-Donat
closed
7 months ago
0
How to compare the likelihood in two models?
#162
YuzhouGong
closed
7 months ago
0
Is there exist correlation between gene family expansion and gene copy number increase?
#161
wjl-cpu
closed
7 months ago
0
result report.cafe node name error
#160
liuchang707
closed
5 months ago
1
Questions about expanding and contracting genes on tree branches and species nodes
#158
Wenwen012345
closed
8 months ago
0
when I compile CAFE5 in Ubuntu , I get some error and don't konw how to solve
#156
Wangsiyuan526
closed
3 months ago
3
how to compare likelihoods of lambda models
#154
chun-he-316
closed
10 months ago
0
std::out of range error
#153
kalimero0411
opened
10 months ago
4
Failed to initialize any reasonable values
#151
sophie-03
closed
10 months ago
0
Memory requirements
#148
MWSchmid
closed
11 months ago
0
Add 5.1 to bioconda
#147
xiekunwhy
closed
10 months ago
1
Nelson-Meads optimizer
#145
jaredbernard
closed
11 months ago
0
an error burst when make CAFE
#143
davidzxs123344
closed
12 months ago
0
The value of k
#140
wjq1981
closed
1 year ago
0
Identifying specific expanded genes
#136
romseg
closed
1 year ago
0
orthogroups of expansions/contractions
#135
Rhia15
closed
1 year ago
0
How to compile cafexp
#133
panosioannidis
closed
1 year ago
2
what's the output of longest_iso.py
#131
smallfishcui
closed
1 year ago
0
why CAFE5 does not show familes amount with no changes which is summarized in CAFE4
#129
sunriseTM
closed
1 year ago
0
outlier gene families
#127
marcelauliano
closed
1 year ago
3
How should I extract the gene ID of expansion and contraction?
#124
zuodabin
closed
1 year ago
2
How to choose comparative species？
#123
zhangwenda0518
closed
1 year ago
1
families with the largest difference
#121
iaunicorn
closed
1 year ago
1
clade_and_size_filter.py errors ！
#120
zhangwenda0518
closed
1 year ago
1
compilation issue mac
#118
piyalkarum
closed
1 year ago
6
No bin file in the installed CAFE5
#116
Priyanka-uq
closed
1 year ago
0
Compiling problem on MAC
#115
ChaoShenzjs
closed
1 year ago
3
How to annotate expanded/extracted gene families?
#114
Ruiqi-CUB
closed
1 year ago
0
How can we set the number of CPU threads in CAFE5?
#112
ymat2
closed
1 year ago
0
'make' fails.
#111
hannahdevens
closed
1 year ago
3
which tree should be selected to display
#109
iaunicorn
closed
1 year ago
4
compilation terminated.
#108
mergi-2674
closed
1 year ago
3
Can the tree file (Newick format) contain the node Bootstrp check value?
#106
sunjiahe-hub
closed
1 year ago
0
Why branch length is always wrong?
#104
YuChrming
closed
1 year ago
0
/public/home/zhaoli/.lsbatch/1668820123.74270749: line 8: 26049 Illegal instruction (core dumped) cafe5 -i gene_families.txt1 -t tree.txt -o k2p
#103
Jiangjiangzhang6
closed
1 year ago
4
Is Lambda too high?
#101
J-Calvelo
closed
1 year ago
6
Use of the Akaike information criterion
#97
shelkmike
closed
1 year ago
0
Next