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haiyang1986 / Subtype-GAN

a deep learning approach for integrative cancer subtyping of multi-omics data
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comparison with MCCA, iCluster, LRACluster, NEMO and SNF? #7

Open alberdia opened 1 week ago

alberdia commented 1 week ago

The paper mentions comparison with some state of the art techniques but I don't find the implementatio of these in the code. I'm talking about: MCCA, iCluster, LRACluster, NEMO and SNF. Where can I fid the code to make the comparion with this? Thank you.

haiyang1986 commented 1 week ago

Thank you for your question! The comparison algorithms you mentioned (MCCA, iCluster, LRACluster, NEMO, and SNF) can be found in their respective papers and software documentation. These methods are typically available in R or Python, and you can follow their guidelines to run the comparisons. As an example, we have provided code for performance comparison using PINSPlus in the file pins_run.R. Additionally, all the results and performance metrics for the comparison algorithms are available in the results folder. Best regards.