The Amissense Tool analyzes and visualizes AlphaMissense pathogenicity scores, integrating AlphaFold structures and ClinVar data. It offers automated pipelines, visualizations, and versatile command-line utilities.
Description:
The logic for downloading PDB files from both AlphaFold and RCSB PDB is currently scattered across the codebase. It would be more efficient to consolidate this logic into a single function, reducing redundancy.
Proposed Solution:
Create a unified function that handles downloading PDB files from both AlphaFold and RCSB PDB.
Ensure that this function is flexible enough to handle different PDB sources and paths.
Description:
The logic for downloading PDB files from both AlphaFold and RCSB PDB is currently scattered across the codebase. It would be more efficient to consolidate this logic into a single function, reducing redundancy.
Proposed Solution: