Closed nielshanson closed 11 years ago
After creating a PGDB, the Pipeline should run and extract pathway and gene lists from a PGDB. The completed files should be put in the results/pgdb folder for each output set.
i.e. results/pgdb/$sample_name.pwys.txt as tab separated file
Pathway_short_name Pathway_common_name #Reactions #ORFs_found PWY-XXXX Carbon Cycle 12 6
i.e. results/pgdb/$sample_name.rxns.txt
Pathway_short_name Pathway_long_name #Reactions #ORFs $RXN)1 #ORFs $RXN_2 #ORFs ... $RXN_N #ORFs
After creating a PGDB, the Pipeline should run and extract pathway and gene lists from a PGDB. The completed files should be put in the results/pgdb folder for each output set.
i.e. results/pgdb/$sample_name.pwys.txt as tab separated file
i.e. results/pgdb/$sample_name.rxns.txt