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hansenlab / minfi

Devel repository for minfi
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error in minfi dmpFinder #166

Open JieqiongDai opened 6 years ago

JieqiongDai commented 6 years ago

Hi, I tried to run minfi dmpFinder, but it gave me an error message: Error in is(M, "DelayedMatrix") : object 'M' not found The input beta data matrix is numeric. I did a test with my previously working script and samples, but got the same error message. The only change as I know is that the centOS system is just updated in our HPC, and we currently use R/3.5.0. Could you please help to figure out the problem?

Thanks,

Jieqiong

kasperdanielhansen commented 6 years ago

This is almost certainly fixed in the github devel version of minfi. We will push a fix to the release / devel branch of minfi over the weekend (delayed because I have some imminent deadlines).

On Wed, Jun 13, 2018 at 10:35 PM, JieqiongDai notifications@github.com wrote:

Hi, I tried to run minfi dmpFinder, but it gave me an error message: Error in is(M, "DelayedMatrix") : object 'M' not found The input beta data matrix is numeric. I did a test with my previously working script and samples, but got the same error message. The only change as I know is that the centOS system is just updated in our HPC, and we currently use R/3.5.0. Could you please help to figure out the problem?

Thanks,

Jieqiong

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JieqiongDai commented 6 years ago

I see. Thanks very much!

Jieqiong