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DSS
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DSS-2.40.0 running out of time
#49
MithilG
opened
1 week ago
0
error in callDMR(): Error in if (class(DMLresult)[2] == "DMLtest.multiFactor") flag.multifactor = TRUE: missing value where TRUE/FALSE needed
#48
teryyoung
opened
1 month ago
0
question about constructing hypothesis test ( DMLtest.multiFactor)
#47
shaghayeghsoudi
closed
1 month ago
2
unbalanced number of replicates
#46
LandiMi2
opened
2 months ago
0
error with DMLtest in DSS (DNA methylation analysis)
#45
shaghayeghsoudi
closed
2 months ago
2
Hypothesis testing in function `DMLtest.multiFactor`
#44
wbvguo
closed
10 months ago
4
DSS package cannot be installed with Bioconductor 3.18
#43
carriefa05
opened
11 months ago
1
Error information from makeBSseqData function
#42
DengEr-1993
opened
11 months ago
2
Question about paired experimental design with correction plus testing interaction effect?
#41
KristenKrolick
opened
1 year ago
16
Question about using callDMR or callDML for paired design?
#40
KristenKrolick
opened
1 year ago
0
Filter on WGMS poorly covered regions
#39
SaraValsoni
opened
1 year ago
0
Installation error
#38
nash5202
closed
1 year ago
2
diff.Methy in callDMR
#37
BeatrizFaustino
opened
1 year ago
3
coverage, prior (-3,1)
#36
BeatrizFaustino
opened
1 year ago
1
Confusing DMLtest outputs with smoothing
#35
weishwu
opened
1 year ago
0
Adding coeficient names to the fit$beta columns
#34
llrs
opened
1 year ago
0
question about constructing hypothesis test
#33
shuaichenli
opened
1 year ago
0
Subclass `"data.frame"` rather than superclassing it
#32
DavisVaughan
closed
1 year ago
4
How dis.merge works?
#31
vahidAK
closed
1 year ago
7
Feature request: Using pre-computed smoothed values to run DML
#30
zroger49
closed
1 year ago
2
Gene annotation problem
#29
yy549159265
opened
2 years ago
2
DMLtest Always show 0%
#28
yy549159265
closed
2 years ago
1
Error creating BSseq object using `makeBSseqData`
#27
dy-lin
closed
4 months ago
3
DMR direction from DMLtest.multifactor
#26
jdilme
closed
2 years ago
15
Gene set enrichment analysis
#25
malonzm1
opened
2 years ago
1
.
#24
emrgt
closed
2 years ago
2
Using 200 cores does not change much than 100 cores.
#23
realzhang
opened
2 years ago
11
An error when running DMLtest
#22
hengxing12
opened
2 years ago
3
Some confusions about DSS
#21
nedevil
opened
2 years ago
2
"NA"s in dmltest output
#20
milaeri
opened
2 years ago
11
Clarification of groups in DMLtest
#19
tkanholm
opened
3 years ago
3
How do I do with this error
#18
realzhang
opened
3 years ago
3
results from DML calling using DSS with smoothing show non-CpG sites
#17
Yuxinagli
closed
3 years ago
2
DSS DMLtest with smoothing not consistent between DSS versions.
#16
Christian-Heyer
opened
3 years ago
2
creation of conda environment fails on Ubuntu 18.04.5 LTS
#15
ViHammer
opened
4 years ago
3
Error in rowVars(p) : could not find function "rowVars"
#14
alexw-gsct
opened
4 years ago
6
Error when performing statistical test for DML with smoothing
#13
xiuru
opened
4 years ago
9
return beta-binomial dispersion from DMLfit.multiFactor
#12
dariomel
opened
4 years ago
7
Suggest adding sorting to makeBSseqData
#11
Shians
opened
4 years ago
2
Running DMLfit with large number of loci
#10
eribue
opened
4 years ago
6
Singular matrix error in solve() when running waldTest()
#9
aedanr
opened
4 years ago
6
Calling DMRs with strand informations
#8
pterzian
closed
4 years ago
2
Error running DMLtest with single replicates (1x1 comparison)
#7
bmreilly
closed
4 years ago
4
RRBS have no replicates
#6
Soleilcode
opened
5 years ago
1
Support DMLtest for Methrix object
#5
PoisonAlien
opened
5 years ago
6
Corroborating DSS DMRs
#4
jckhearn
opened
5 years ago
3
DML.multiFactor on regions
#3
RoseString
opened
5 years ago
0
How can I use FDR as threshold for callDMR ?
#2
bishwaG
opened
6 years ago
8
How to adjust covariates in DSS?
#1
bishwaG
closed
6 years ago
8