hardingnj xpclr issues - Githubissues

hardingnj / xpclr

Code to compute the XP-CLR statistic to infer natural selection

MIT License

85 stars 26 forks source link

issues

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The columns for xpclr and xpclr-norm are empty In the result file.

#107 limaoshi opened 4 weeks ago
0
How to screen for regions under selection based on XPCLR values

#106 lvqiang0120 opened 1 month ago
1
All SNPs excluded as multiallelic

#105 HuTaoJiaZiAckerman opened 5 months ago
0
LD-filter

#104 enluo211 opened 5 months ago
0
How to set the parameters

#103 zishanw opened 6 months ago
2
Segmentation fault

#102 SchachtmanLab opened 6 months ago
1
almost all chromosome return xpclr equal to zero？

#101 huangl07 opened 6 months ago
0
Use artificial F1 vcf to run XP-CLR for selfing species?

#100 hungweichen0327 opened 6 months ago
0
Just started with xpclr

#99 jahneldardavik opened 8 months ago
2
the xpclr was error when run withe variants

#98 Jiangjiangzhang6 opened 9 months ago
2
What does 'popA' and 'popB' represent？

#97 chen1238 closed 10 months ago
0
When XPCLR is positive and greater than some threshold, does it mean that it is subject to positive selection in SamplesB(PopB);

#96 kuangzhuoran opened 10 months ago
0
ValueError: operands could not be broadcast together with shapes

#95 maizecxwu opened 1 year ago
3
Citing xpclr

#94 gsy729 opened 1 year ago
0
TypeError: not all arguments converted during string formatting

#93 Peijiawei2022 opened 1 year ago
6
TypeError

#92 yrahimi opened 1 year ago
3
TypeError: ufunc 'true_divide' not supported for the input types, and the inputs could not be safely coerced to any supported types according to the casting rule ''safe''

#91 LDS-axel opened 1 year ago
6
when used A and B as target

#90 linhai1221 opened 1 year ago
0
Input files requirement for XP-CLR

#89 dhimanamar opened 1 year ago
2
AttributeError: 'NoneType' object has no attribute 'keys'

#88 xibeixingchen opened 1 year ago
4
About genetic position: two decimal places

#87 Qiuming1986 opened 1 year ago
1
About genetic position: two decimal places, transformation betw

#86 Qiuming1986 closed 1 year ago
0
xpclr running problem

#85 DongxinWang9 opened 1 year ago
2
number of threads

#84 XiaXiaTianTian opened 1 year ago
2
UserWarning: 'None' INFO header not found

#83 BioInfoNoob opened 1 year ago
8
Index Error: index 1 is out of bounds for axis 1 with size 1

#82 huangl07 opened 2 years ago
1
RuntimeError: VCF file is missing mandatory header line ("#CHROM...")

#81 erya-song opened 2 years ago
1
A few typo fixes and adding GDist to VCF loading

#80 James-S-Santangelo closed 2 years ago
3
ModuleNotFoundError: No module named 'allel'

#79 XiaXiaTianTian opened 2 years ago
9
--rrate

#78 sadiexiaoyu opened 2 years ago
0
Inconsistent results across replicate runs and different input formats

#77 James-S-Santangelo closed 2 years ago
2
ValueError: Wrong number of columns at line

#76 mayufeifei28 opened 2 years ago
1
No permission to write in the specified directory

#75 fxfish opened 2 years ago
4
Issue: The 'xpclr==1.1.2' distribution was not found and is required by the application

#74 ricebrian opened 2 years ago
5
Questions about inbreeding species and parameter

#73 Axolotl233 opened 2 years ago
3
polyploid vcf

#72 janet-higgins13 opened 2 years ago
3
The format of gdistkey file?

#71 xiekunwhy opened 2 years ago
5
AttributeError: 'NoneType' object has no attribute 'strip'

#70 ShuqiDiao opened 2 years ago
4
The unit of -rrate

#69 sandyplus opened 3 years ago
1
decide window size or maxsnps

#68 laolanllx opened 3 years ago
1
ImportError: cannot import name lru_cache

#67 dawei1203 closed 3 years ago
0
The xpclr score is 0.0

#66 shehongbing opened 3 years ago
1
conda install failure

#65 jodyhey opened 3 years ago
7
Quite different results against with Chen's XPCLR programming

#64 QianXiaobo opened 3 years ago
4
Unable to detect known sweep regions

#63 sandipmkale closed 3 years ago
1
A bug of output file.

#62 zhiquanyang closed 3 years ago
2
Input file and genetic map requirement

#61 hungweichen0327 opened 3 years ago
2
How to understand SNPs excluded as invariant or singleton in population 2

#60 yuan102379 opened 3 years ago
1
No sel_coef

#59 PhDMattyB closed 3 years ago
4
fix a bug of path

#58 xuzhougeng closed 3 years ago
3