search

harvardinformatics / snpArcher

Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
MIT License
69 stars 32 forks source link

support snakemake >= 8.0 #149

Closed cademirch closed 5 months ago

cademirch commented 9 months ago

Snakemake made some pretty big changes in their newest release. Seems to break a few things we depend on #147. Using this to document and fix

cademirch commented 8 months ago

Snakemake 8 migration docs: https://snakemake.readthedocs.io/en/latest/getting_started/migration.html#migrating-to-snakemake-8

tsackton commented 6 months ago

In addition, reconfigure our profile setup to support slurm using the "workflow profile" setup.

tsackton commented 5 months ago

Should be closed by #170