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hasindu2008
/
f5c
Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)
https://hasindu2008.github.io/f5c/docs/overview
MIT License
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Unexpected segmentation fault
#138
lmulroney
closed
1 year ago
3
f5c v1.2 to run the eventalign in R10 data
#137
shuyi122425
closed
1 year ago
6
Identifying positive/negative strand mapping from eventalign
#136
hengjwj
closed
1 year ago
12
Error Running Call Methylation
#135
katiestoker
closed
1 year ago
6
fix bugs in certain paf columns
#134
hasindu2008
closed
1 year ago
0
Sam
#133
hasindu2008
closed
1 year ago
0
genomic coordinate of dRNA eventalign
#132
sunsetyerin
closed
1 year ago
5
Eventalign paf
#131
hasindu2008
closed
1 year ago
0
Default parameters used in Event detection function
#130
loganylchen
closed
5 months ago
9
recommended threshold for the log likelihood ratio
#129
PengNi
opened
1 year ago
4
Scale-events option info
#128
F0nz0
closed
1 year ago
7
Update output-eventalign.md
#127
hiruna72
closed
1 year ago
0
Update output-eventalign.md
#126
hiruna72
closed
1 year ago
0
f5c index error in snakemake
#125
Tomcxf
closed
1 year ago
10
no alignment in most reads
#124
Arkadiy-Garber
closed
1 year ago
29
resquiggle
#123
caojiabao
closed
1 year ago
4
Graphmap2 compatibility
#122
F0nz0
closed
1 year ago
5
ERROR in f5c eventalign
#121
loganylchen
closed
1 year ago
31
sprintf_append dynamic
#120
sashajenner
closed
1 year ago
0
mC in other motifs and R10
#119
yusmiatiliau
closed
1 year ago
10
resquiggle in f5c
#118
loganylchen
closed
1 year ago
1
f5c index
#117
pedramPP
closed
1 year ago
11
Empty bam and tsv file with f5c methylation calling
#116
PanZiwei
closed
1 year ago
5
few sites from LSK114
#115
ogrecio
closed
1 year ago
7
[Request] An option to filter out signal spikes
#114
patbohn
closed
5 months ago
6
Error in eventalign
#113
Tomcxf
closed
1 year ago
5
avoid skip when using f5c eventalign
#112
xieyy46
closed
1 year ago
8
Resquiggle
#111
hasindu2008
closed
2 years ago
0
Meth-freq treshold issue
#110
jotanan98
closed
2 years ago
3
Compiling on a Macbook Pro M1 fails
#109
noncodo
closed
2 years ago
9
How to make f5c work inside a nextflow pipeline?
#108
bhargava-morampalli
closed
2 years ago
4
Question: Directory of blow5:s as input?
#107
kpalin
closed
2 years ago
4
[get_rank::WARNING] A None ACGT base found : U
#106
JeremyQuo
closed
2 years ago
2
Cannot index files compressed with gzip, please use bgzip
#105
mantonglaw
closed
2 years ago
2
call-methylation crashes with stack smashing detected
#104
TromboneEngineer
closed
2 years ago
12
f5c meth-freq invalid
#103
mantonglaw
closed
2 years ago
1
[get_rank::WARNING] A None ACGT base found : U
#102
F0nz0
closed
2 years ago
2
The output of f5c for evenaligning is quite different from nanopolish
#101
mantonglaw
closed
2 years ago
2
Resquiggle
#100
hiruna72
closed
2 years ago
0
raw signal to basecalled read alignment
#99
hiruna72
closed
2 years ago
0
Inconsistent strand output for direct RNA-seq reads
#98
Kevinzjy
closed
2 years ago
3
blow5 file as input file
#97
mantonglaw
closed
2 years ago
7
Incorrect header with correct header
#96
Coracollar
closed
2 years ago
5
feature suggestion: collapse events option for eventalign
#95
mparker2
closed
2 years ago
14
requires slow5 when using -x hpc-mid (or maybe any profile?)
#94
mparker2
closed
2 years ago
2
5fc index --sequencing_summary
#93
will-NYGC
closed
3 years ago
5
f5c eventaling -w flag behaviour
#92
F0nz0
closed
3 years ago
6
Dev
#91
hasindu2008
closed
3 years ago
0
Short option for "window" missing in "call-methylation
#90
kpalin
closed
3 years ago
2
script to dowload libvbz_hdf_plugin.so file
#89
hiruna72
closed
3 years ago
0
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