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hbctraining
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scRNA-seq_online
https://hbctraining.github.io/scRNA-seq_online/.
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add an image to represent the Seurat object
#120
mistrm82
opened
4 weeks ago
1
3day scrnaseq with added material
#119
mistrm82
closed
1 month ago
0
Trouble downloading ' scRNA-seq filtered counts' from the Pseudobulk DEG analysis tutorial
#118
yeseul830
closed
1 week ago
4
PCA and elbow plot
#117
ptranvan
opened
3 months ago
0
Pseudobulk functionality within Seurat
#116
pipes82
opened
3 months ago
1
cycle.rda file missing
#115
ChrisSteel-bio
closed
1 month ago
1
v5 issue with GetAssay()
#114
mistrm82
closed
1 month ago
1
Adding new visualizations
#113
mistrm82
closed
6 months ago
0
many to many warning when assigning annotations to markers in scRNAseq
#112
hwick
opened
8 months ago
0
update some of the visualizations
#111
mistrm82
closed
3 weeks ago
0
Quality Control visualizations
#110
chenqing1991
closed
1 month ago
1
08 clustering qc errors
#109
hwick
closed
9 months ago
2
cell cycle phase in seurat_integrated isn't kept?
#108
hwick
closed
9 months ago
1
cell cycle scoring may need updates
#107
hwick
closed
9 months ago
2
more challenging exercises
#106
mistrm82
opened
10 months ago
0
Add materials on troubleshooting
#105
mistrm82
opened
10 months ago
0
update links in "Resources"
#104
mistrm82
closed
1 month ago
1
redundant code
#103
mistrm82
closed
9 months ago
1
DESeq2 normalization
#102
jc271828
closed
11 months ago
3
Matrix.utils package (used in pseudobulk DEA lesson) is archived from CRAN
#101
Amelie-TGHN
opened
1 year ago
0
Error in theory of PCA
#100
hortensebst
closed
11 months ago
1
obtaining raw data for the tutorial (lesson 03 SC quality control setup)
#99
obalasz
closed
1 year ago
1
set seed at the start of the workshop
#98
rkhetani
closed
11 months ago
1
Normalization at various steps
#97
rkhetani
closed
4 weeks ago
5
Using SCT for marker ID
#96
rkhetani
closed
3 weeks ago
3
add code for unintegrated UMAP
#95
mistrm82
closed
11 months ago
1
doublet detection tools
#94
rkhetani
closed
3 weeks ago
0
Update all links for project download
#93
mistrm82
closed
1 year ago
0
SCT v2
#92
mistrm82
closed
1 year ago
0
Issues with the scRNAseq workshop material and my own data - integration
#91
Hannah-Doerpholz
closed
1 year ago
6
Decision tree?
#90
eberdan
closed
3 weeks ago
3
using "v2" for SCTransform
#89
mistrm82
closed
1 year ago
2
SCT changes to lesson an code
#88
mistrm82
closed
1 year ago
1
harmony integration edits
#87
mistrm82
closed
1 year ago
0
started new section on Harmony
#86
Amelie-TGHN
closed
1 year ago
0
adding a note on Harmony
#85
mistrm82
closed
1 year ago
1
pseudobulk DE paired design
#84
mistrm82
opened
1 year ago
0
link broken in pseudobulk lesson
#83
mistrm82
closed
1 year ago
0
reviewed up to exploration of results
#82
Amelie-TGHN
closed
1 year ago
1
fix minor typos & formatting
#81
kew24
closed
2 years ago
1
Missing file in scRNA-seq analysis -> Downstream Analysis -> Differential Expression Between Conditions
#80
singhh5050
closed
2 years ago
2
single_cell_rnaseq.zip no longer available on Dropbox
#79
rbatorsky
closed
2 years ago
4
new version of scTransform released!
#78
pipes82
closed
1 year ago
3
split_seurat.rds dataset was out of data
#77
JiaqiHu2021
closed
2 years ago
2
break down the clustering explanation
#76
mistrm82
closed
1 year ago
0
shuffling the QC content for flow
#75
mistrm82
closed
2 years ago
0
Confused about using "sum" for pseudobulk DESeq2
#74
Famingzhao
closed
2 years ago
1
Regressing out cell cycle scores on SCTransform work-flow
#73
camelest
closed
3 weeks ago
0
break down clustering explanation
#72
mistrm82
closed
1 year ago
1
updating the lesson goals, challenges, recommendations
#71
mistrm82
opened
2 years ago
0
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