Finding consensus models across samples...
Found 1 consensus model(s)
Generating consensus clonal evolution trees across samples...
Error in aggregate.data.frame(mf[1L], mf[-1L], FUN = FUN, ...) :
no rows to aggregate
Here is the input data file of infer.clonal.models, where vaf.col.names=c("M1.vaf" ,"M2.vaf" "P.vaf"), ccf.col.names=c("M1.ccf" ,"M2.ccf" "P.ccf"), sample.groups=c("M","M","P"), names of sample.groups=c("M1","M2","P").
P is primary tumor, both M1 and M2 are metastasis tumor. P and M are from the same patient.
Hello, When I run infer.clonal.models, an error occurred.
y = infer.clonal.models(variants = data, cluster.col.name = 'cluster', vaf.col.names = vaf.col.names, ccf.col.names = ccf.col.names, sample.groups = sample.groups, cancer.initiation.model='monoclonal', subclonal.test = 'bootstrap', subclonal.test.model = 'non-parametric', num.boots = 1000, random.seed = 1234567, founding.cluster = 1, cluster.center = 'median', ignore.clusters = c(2,3,4), clone.colors = clone.colors, min.cluster.vaf = NULL, sum.p = 0.05, alpha = 0.05)
Finding consensus models across samples... Found 1 consensus model(s) Generating consensus clonal evolution trees across samples... Error in aggregate.data.frame(mf[1L], mf[-1L], FUN = FUN, ...) : no rows to aggregate
Here is the input data file of infer.clonal.models, where vaf.col.names=c("M1.vaf" ,"M2.vaf" "P.vaf"), ccf.col.names=c("M1.ccf" ,"M2.ccf" "P.ccf"), sample.groups=c("M","M","P"), names of sample.groups=c("M1","M2","P"). P is primary tumor, both M1 and M2 are metastasis tumor. P and M are from the same patient.
example_data.txt![box](https://user-images.githubusercontent.com/15100260/103132201-b2b7b500-46de-11eb-9001-e989f14d04f9.png)
Thank you very much!