heiniglab / scPower-Cell-Atlas

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Seperating big vectors into chunks #2

Open Cem-Gulec opened 1 year ago

Cem-Gulec commented 1 year ago

How error looks like? Error: cannot allocate vector of size 9.8 Gb

Is your feature request related to a problem? Please describe. Specifically for the datasets of heart and lung, it is not really possible to process them without big hardware recources - which is not really efficient.

Describe the solution you'd like For each cell type in the matrix, μ and r values (gamma mixed fits) can be extracted and could progress from there on. Also see anndata, might help on reading for an alternative solution

Cem-Gulec commented 1 year ago

fixed by 84286e49c1e3d8b57703c28224863cf376fa1d0e