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hemberg-lab / SC3

A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
http://bioconductor.org/packages/SC3
GNU General Public License v3.0
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long vectors are not supported in .C #107

Closed zhangtongda closed 2 years ago

zhangtongda commented 2 years ago

Hello,

I get the following error message: ......................

Error in predict.svm(model, t(study)) : long vectors (argument 23) are not supported in .C Calls: sc3_run_svm ... sc3_run_svm -> support_vector_machines -> predict -> predict.svm Execution halted

mhemberg commented 2 years ago

I am not sure how to fix this, but for larger datasets I strongly recommend that you use the new version of SC3:

https://github.com/hemberg-lab/sc3s

Main downside is that it is for python rather than R, but the improved performance should more than make up for the hassle.