When running the single cell RNA seq course last week. We found that the command:
srat <- FindClusters(srat, verbose = F, algorithm = 4, resolution = 0.9)
produced the error:
Error: Cannot find Leiden algorithm, please install through pip (e.g. pip install leidenalg).
even though the dockerfile contains:
RUN pip install --upgrade --no-cache leidenalg
This error occurred when students tried to run the Seurat notebook through Rstudio.
When running the single cell RNA seq course last week. We found that the command:
srat <- FindClusters(srat, verbose = F, algorithm = 4, resolution = 0.9)
produced the error:
Error: Cannot find Leiden algorithm, please install through pip (e.g. pip install leidenalg).
even though the dockerfile contains:
RUN pip install --upgrade --no-cache leidenalg
This error occurred when students tried to run the Seurat notebook through Rstudio.