hesselberthlab scrunchy issues

hesselberthlab / scrunchy

R toolkit for the analysis of single-cell functional heterogeneity

https://scrunchy.hesselberthlab.org/

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issues

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Various

#69 kriemo closed 4 years ago
1
Use CRAN leiden

#68 jayhesselberth closed 5 years ago
0
10x v3 codes

#67 jayhesselberth opened 5 years ago
0
Add 10x Genomics V3 cell barcode map

#66 jayhesselberth closed 5 years ago
0
Add map of 10x V3 cell indexes for mRNA to feature barcode

#65 jayhesselberth closed 5 years ago
0
Use geom_sina from ggforce instead of ggbeeswarm

#64 jayhesselberth opened 5 years ago
0
Analyses

#63 jayhesselberth opened 5 years ago
0
load multiple features from a single sparseMatrix

#62 kriemo closed 5 years ago
1
Add compatibility to read in feature and mrna data from cellranger

#61 kriemo closed 5 years ago
5
adding stats to plots

#60 mandylr closed 5 years ago
0
Add significance bars programatically

#59 jayhesselberth closed 5 years ago
2
Add labels and fix plotting

#58 mandylr closed 5 years ago
1
Make installation more robust

#57 jayhesselberth opened 5 years ago
0
NCBI GEO submission

#56 jayhesselberth closed 5 years ago
1
Add gene ids back to features.tsv.gz

#55 kriemo closed 5 years ago
0
Implement calc_cell_cycle

#54 jayhesselberth closed 5 years ago
0
Need ENS IDs for cyclone

#53 jayhesselberth closed 5 years ago
4
reproducible cluster_leiden

#52 jayhesselberth closed 5 years ago
0
clustering with Leiden algorithm

#51 jayhesselberth opened 5 years ago
1
Implement cluster_leiden

#50 jayhesselberth closed 5 years ago
0
Enrichment score for stats

#49 jayhesselberth closed 5 years ago
1
Activity ratios

#48 jayhesselberth closed 5 years ago
1
cell type classifications

#47 mandylr closed 5 years ago
2
add tests and clean up of read/write functions

#46 kriemo closed 5 years ago
0
Implement stat_anova

#45 jayhesselberth closed 5 years ago
0
update file inputs to be gzipped

#44 kriemo closed 5 years ago
0
Rename stat_activity_grouped

#43 jayhesselberth closed 5 years ago
0
ANOVA strategy

#42 jayhesselberth opened 5 years ago
2
differences between activities and groups

#41 jayhesselberth opened 5 years ago
1
all-by-all correlations

#40 jayhesselberth opened 5 years ago
0
Seeds for reproducible calcs

#39 jayhesselberth closed 5 years ago
0
stats reference

#38 jayhesselberth closed 5 years ago
1
Implement calc_group_stats

#37 jayhesselberth closed 5 years ago
0
Behavior of tidy_logcounts

#36 jayhesselberth closed 5 years ago
0
utility functions to filter sparse matrix

#35 kriemo closed 5 years ago
0
Add labels to plot_dims

#34 jayhesselberth closed 5 years ago
1
add some mrnas

#33 kriemo closed 5 years ago
0
Add some mRNAs to fsce_tidy

#32 jayhesselberth closed 5 years ago
1
add code to generate subsampled data

#31 kriemo closed 5 years ago
0
Implement plot_heatmap

#30 jayhesselberth closed 5 years ago
0
Draw vlines at adduct positions

#29 jayhesselberth opened 5 years ago
0
Need consistent cell IDs

#28 jayhesselberth closed 5 years ago
0
More tidiers

#27 jayhesselberth closed 5 years ago
0
Remove stringr dependency

#26 jayhesselberth closed 5 years ago
0
check input files using file_exists rather than using string matching

#25 kriemo closed 5 years ago
0
read_matrix path handling

#24 jayhesselberth closed 5 years ago
1
Graph-based clustering

#23 jayhesselberth closed 5 years ago
0
Small example data set

#22 jayhesselberth closed 5 years ago
1
sequence saturation and knee plots

#21 kriemo closed 5 years ago
0
utility function to convert umi_tools output to .mtx format.

#20 kriemo closed 5 years ago
0