issues
search
higlass
/
clodius
Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
MIT License
38
stars
21
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Fixed checking of types
#156
AryazE
opened
1 day ago
0
Fixed type mismatch (#154)
#155
AryazE
opened
1 day ago
0
Different types in `nan_data_buffers`
#154
AryazE
opened
2 days ago
0
Use in-place sort
#153
AryazE
closed
1 week ago
1
Pandas FutureWarning: Series.__getitem__ deprecation warning
#152
manzt
opened
4 months ago
2
Remove max_chunk
#151
nvictus
closed
1 year ago
0
cooler >0.9.0 support
#150
sergpolly
closed
1 year ago
7
feat: hatchling build system, update workflows
#149
manzt
closed
1 year ago
5
fix: setup doesn't require numpy
#148
manzt
closed
1 year ago
1
fix: use builtin warnings instead of np.warnings
#147
manzt
closed
1 year ago
0
chore: favor 'items()' over 'iteritems()'
#146
manzt
closed
1 year ago
0
Check if row infos need decoding and if they're json-formatted
#145
pkerpedjiev
closed
2 years ago
0
Unable to convert bed to States Data (multivec) file using clodius bedfile-to-multivec
#144
haotingjia0
opened
2 years ago
11
Don't hard pin requirement versions
#143
nvictus
closed
2 years ago
3
Ability to support file-like objects in `clodius.tiles`
#142
manzt
opened
2 years ago
1
Bump versions and add bigwig_to_multivec
#141
pkerpedjiev
closed
2 years ago
0
Handle narrow matrices in clodius.tile.npmatrix
#140
pkerpedjiev
closed
2 years ago
0
Added updated bam file fetcher
#139
pkerpedjiev
closed
3 years ago
0
Add FASTA tileset
#138
101arrowz
closed
3 years ago
1
Consolidated tsinfo chromsizes
#137
pkerpedjiev
closed
3 years ago
0
error installation
#136
Nico-FR
opened
3 years ago
5
Flekschas/faster beddb
#135
flekschas
opened
3 years ago
0
No default assembly
#134
pkerpedjiev
closed
3 years ago
0
Informative error msg if input bedfile is not sorted.
#133
maxwellsh
closed
3 years ago
0
Get multivec row_infos from info/row_infos, as a dataset
#132
keller-mark
closed
4 years ago
0
Flekschas/automatic 1d 2d bedpedb tiles
#131
flekschas
closed
4 years ago
0
Improve 1d bedpedb tiles getter. Harmonize bedpedb function names
#130
flekschas
closed
4 years ago
0
Improve bedpe aggregation
#129
flekschas
closed
4 years ago
0
obsolete "clodius aggregate bigwig" example on the main page
#128
mimakaev
closed
4 years ago
1
aggregate bedgraph keeps being killed
#127
astrovsky01
opened
4 years ago
5
Set up error
#126
anilkanthi
opened
4 years ago
2
More accurate generation of tiles that span across chromosomes
#125
alexander-veit
closed
4 years ago
6
'Invalid line' message when aggregating bed file
#124
rachadele
closed
4 years ago
3
mean +/- error
#123
zhanyinx
opened
4 years ago
1
Natural chromosome ordering in bam files
#122
pkerpedjiev
closed
4 years ago
0
dummy change to readme
#121
sergpolly
closed
4 years ago
1
Add name from bed file line to beddb db
#120
pkerpedjiev
closed
4 years ago
0
Fix minor typos
#119
keller-mark
closed
4 years ago
0
Pick up the header if it's in the column names
#118
pkerpedjiev
closed
4 years ago
0
Add the zoom level to the beddb r tree for faster retrieval
#117
pkerpedjiev
closed
4 years ago
0
Run black on the entire code base
#116
pkerpedjiev
closed
4 years ago
0
how to prepare the a special bed fild for Higlass
#115
JiangXu123
opened
4 years ago
1
installation error
#114
JiangXu123
closed
4 years ago
10
bigBed tileset service methods and tests
#113
alexpreynolds
closed
4 years ago
7
Add tiles function in tiles.multivec
#112
zhqu1148980644
closed
4 years ago
10
Return BAM data in a columnar format to save space
#111
pkerpedjiev
closed
4 years ago
0
Retain lines when end coordinate is not multiple of resolution
#110
Lmercadom
closed
4 years ago
3
Switch to pytest and add coverage reporting
#109
nvictus
closed
4 years ago
0
Fix hitile
#108
nvictus
closed
4 years ago
0
big binary file engines
#107
nvictus
opened
4 years ago
2
Next