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hildebra
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lotus2
Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
http://lotus2.earlham.ac.uk/
GNU General Public License v3.0
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Can't open myTestRun/tmpFiles//RDPotus.tax :
#72
Natalie-koks
closed
1 week ago
2
-taxOnly seems to discard some sequences
#71
ingeborgklara
opened
1 month ago
2
Errors with SDM
#70
thecrobe
opened
1 month ago
1
Option to handle read-through into primer for its sequences
#69
paulzierep
opened
2 months ago
2
processing
#68
CFox-Lin
closed
3 months ago
1
Trying to process ONT partial LSU amplicons
#67
SebaZambrano
opened
3 months ago
4
GG2 DB file not installed in update
#66
we32i225
closed
3 months ago
3
LotuS2 Error: Missing LotuS_progout.log
#65
atfdh
opened
3 months ago
3
reference DB when using RDPclassifier
#64
CFox-Lin
opened
4 months ago
1
off context usage for general amplicons
#63
splaisan
closed
4 months ago
2
AmpliconShortPE usage
#62
rigormortis0
closed
5 months ago
1
triming process and saving trimmed reads
#61
ramiroricardo
opened
5 months ago
1
blast output
#60
johnrandallia
closed
5 months ago
2
pigz db build
#59
uloeber
closed
5 months ago
5
error when using DADA2
#58
we32i225
closed
4 months ago
2
BOLD DB with COI references
#57
johnrandallia
closed
5 months ago
1
save demultiplex
#56
johnrandallia
opened
6 months ago
2
RDP mv file
#55
johnrandallia
closed
5 months ago
2
Fix typos
#54
nsoranzo
closed
7 months ago
0
Die if index building failed
#53
nsoranzo
closed
7 months ago
0
Display correct number of cores used
#52
nsoranzo
closed
7 months ago
0
only get a fraction of OTUs back when running lotus2 -taxOnly
#51
slambrechts
closed
6 months ago
4
dada2 pooling options
#50
ramiroricardo
closed
9 months ago
2
Which pipeline results should I trust ? LotuS2 - DADA2 or stand alone DADA2 output?
#49
Balaveer
closed
9 months ago
6
PR2 version
#48
slambrechts
closed
6 months ago
2
UNITE 8 vs 9
#47
slambrechts
closed
9 months ago
5
TaxOnly option specified, but not an output dir.
#46
slambrechts
closed
9 months ago
6
errors when using dada2 clustering
#45
we32i225
closed
9 months ago
3
custom DB causes ParseError thrown: Unexpected character
#44
we32i225
closed
10 months ago
6
Error Assigning taxonomy with SILVA
#43
rjain1990
closed
9 months ago
1
parsing single read
#42
junhuili
closed
9 months ago
2
Does lotus2 allows mismatches in barcodes
#41
gooodle
closed
1 year ago
4
contamination of mitochondrion
#40
codechenx
closed
11 months ago
2
Regarding the fate of reads passed through each step of Lotus2
#39
ShailNair
closed
1 year ago
2
Dada2 - installation
#38
K-Gutierrez
closed
1 year ago
1
can't remove primer using mapping file
#37
codechenx
closed
1 year ago
2
False positive of mapping ASV back to reads?
#36
kingtom2016
closed
1 year ago
4
Lotus2 not reading
#35
thecrobe
closed
1 year ago
1
Analysis for protist
#34
liuchen92
closed
1 year ago
1
analysing only a part of the amplicons
#33
splaisan
closed
1 year ago
0
can we multithread the tree making step?
#32
splaisan
closed
1 year ago
5
Issue running Lotus on PacBio HiFi data
#31
splaisan
closed
1 year ago
2
FR: yaml config file for easy reuse and sharing parameters
#30
splaisan
closed
1 year ago
2
fail to install under OSX with conda
#29
splaisan
closed
1 year ago
12
duplicated ASV sequence
#28
kingtom2016
closed
1 year ago
3
option for hashed OTU ids
#27
kingtom2016
closed
1 year ago
4
How to input demultiplexed, pre-cleaned data
#26
Xentrics
closed
1 year ago
2
Problem with example trial
#25
assemahajemlrefaei
closed
1 year ago
2
Fail to install with conda
#24
luhugerth
closed
1 year ago
2
Concatenation error generates empty mapping files
#23
arachloroptera
closed
1 year ago
2
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