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HISCOM Business
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Document what the community would like from ALA for delivery and linking of DNA data to occurrence records in AVH/ALA #84

Open ben3000 opened 5 years ago

ben3000 commented 5 years ago

Following on from #44 and #53, document what HISCOM's preferred technical specification is for the linking of Genbank accessions to AVH occurrence records. The resulting document should be in HISCOM's Business wiki.

nielsklazenga commented 5 years ago

This should be a lot broader than linking GenBank accessions to occurrence records (which can already be done, although the display needs to be improved). This is about what else scientists in our community, not HISCOM, would like to see in AVH with respect to molecular data.

ben3000 commented 5 years ago

Better?

nielsklazenga commented 5 years ago

:+1:

ben3000 commented 4 years ago

See #87 for the current work towards this goal.

ben3000 commented 4 years ago

See #88 for current work towards this goal.

ben3000 commented 3 years ago

MEL and CHR are already using the unique identifier from Genbank or other DNA storage service and deliver them with a FQDN as a URI in data exchange.

ben3000 commented 3 years ago

Exchange using https://dwc.tdwg.org/terms/#dwc:associatedSequences (as is already done by ALA)

ben3000 commented 3 years ago

Specify database schema version 2.4 adds support for GGBN tissue and DNA data. See https://www.specifysoftware.org/wp-content/uploads/2017/11/Specify-Schema-Update-v2.4-Context.pdf.

afuchs1 commented 2 years ago

ALA 2 projects - Australian Genome Atlas (link species to sequences), some herbaria already have links. Kathryn Hall is project manager. Would be good to get her to talk to HISCOM about the project. CSIRO project - National Biodiversity DNA Libray - doing sequences.