hms-dbmi spp issues - Githubissues

hms-dbmi / spp

SPP - R package for analysis of ChIP-seq and other functional sequencing data

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issues

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error after find.binding.position

#47 GuidoLeoni closed 5 months ago
1
`find.binding.positions` return empty results for narrow peak call

#46 liuyang2006 opened 6 months ago
0
version info on bioconda inconsistent with help text

#45 cmatKhan opened 11 months ago
0
Fix error message output bugs; typo fix

#44 EthanNelson-Moore opened 3 years ago
0
Update with alterantive read.bam.tags function

#43 fferrari opened 3 years ago
1
paired end read BAM files

#42 fferrari opened 3 years ago
0
Cran devel

#41 carmencita opened 4 years ago
0
What does signal value mean exactly?

#40 gengyuncong opened 4 years ago
0
typo

#39 RichardJActon closed 4 years ago
0
typo in the Installation section

#38 paulahsan opened 4 years ago
0
read.bam.tags cannot identify reads strand

#37 Bumblebee5k8m7 opened 5 years ago
7
have some problem with runmean

#36 fengchuiguo1994 closed 5 years ago
2
libstdc++.so.6: version `GLIBCXX_3.4.21' not found

#35 chelauk closed 5 years ago
1
fix tag.lwcc not found

#34 icebert opened 5 years ago
0
Development

#33 carmencita closed 5 years ago
0
Added find_peaks to load table

#32 fbrundu opened 6 years ago
0
Was peaks.c function renamed and how to call it?

#31 fbrundu closed 6 years ago
8
Unable to use window.tag.count

#30 fbrundu closed 6 years ago
2
Getting lots of compilation errors on install: error: call of overloaded 'log(double&)' is ambiguous

#29 endrebak closed 6 years ago
3
Update zroutines.R

#28 fferrari closed 6 years ago
0
Update README.md

#27 fferrari closed 6 years ago
0
merging latest updates to comply with CRAN

#26 fferrari closed 6 years ago
0
Merging revisions for CRAN submission

#25 carmencita closed 6 years ago
0
Last few adjustments

#24 fferrari closed 6 years ago
0
removed unnecessary SPPgenerics - omitted export of functions conflicting with S3 generics + fixed minor C issues causing installation warnings

#23 fferrari closed 6 years ago
0
removed unnecessary SPPgenerics - omitted export of functions conflicting with S3 generics

#22 fferrari closed 6 years ago
1
Just a couple of fixes to address minor R CMD check NOTEs

#21 fferrari closed 6 years ago
0
Update maqmap.c

#20 fferrari closed 6 years ago
0
Update Makevars.in - putting back previous flags

#19 fferrari closed 6 years ago
0
all zroutine funs are now explicitly exported

#18 koustav-pal closed 6 years ago
0
Development - fixed a couple of typos

#17 fferrari closed 6 years ago
0
Changes to multiple files. See body for details.

#16 koustav-pal closed 6 years ago
0
new release?

#15 daler closed 7 years ago
2
Update src files to make installation work

#14 sklasfeld closed 7 years ago
1
SPP halting - Calls: find.binding.positions ... calculate.enrichment.estimates -> lapply -> FUN -> cbind -> cbind -> data.frame

#13 SophieS9 closed 7 years ago
1
SPP installation problem in Mac

#12 dktanwar opened 7 years ago
17
Ubuntu installation error with 1.14 as well

#11 catch-minie closed 7 years ago
1
Replace deprecated headers

#10 detrout closed 7 years ago
0
Improve DESCRIPTION file

#9 paulmenzel closed 8 years ago
1
Improve the README file

#8 paulmenzel closed 8 years ago
0
get.smoothed.tag.density

#7 orchid00 opened 8 years ago
3
write.narrowpeak.binding / columns

#6 orchid00 opened 8 years ago
2
Installation fails on Mac OS X (even for version 1.14)

#5 cattapre opened 8 years ago
3
tag.enrichment.clusters: Error in abs(NULL) : non-numeric argument to mathematical function

#4 your-highness opened 8 years ago
0
spp doesn't see Rsamtools

#3 ophiothrix closed 8 years ago
3
Installation fails on Ubuntu 14.04 with R version 3.3.0

#2 anthony-aylward opened 8 years ago
8
install instructions

#1 ucsf-jdm closed 8 years ago
1