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hoffmangroup / segway

Application for semi-automated genomic annotation.
http://segway.hoffmanlab.org/
GNU General Public License v2.0
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Support for IBM Spectrum LSF #142

Open EricR86 opened 4 years ago

EricR86 commented 4 years ago

Currently there is no official support for IBM Spectrum LSF. Segway has supported older versions of LSF in the past.

We cannot test on IBM Spectrum LSF since we do not have access to this cluster system. However, there is a proposed change that might work.

Around line 73 in segway/cluster/__init.py, change the line from the following:

elif "Platform LSF" in drms_info:  # includes "IBM Platform LSF"

to

elif ("Platform LSF" in drms_info) or ("Spectrum LSF" in drms_info):  # includes "IBM Platform LSF"

This change has not been tested but if it works for you, please report it here so we can take your word for it and merge the changes in.

michaelmhoffman commented 4 years ago

We could also just test for "LSF"