generate genomic feature stats analysis and figure

hputnam / Geoduck_Meth

DNA methylation of geoduck exposed to ocean acidification treatments

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generate genomic feature stats analysis and figure #6

Closed shellywanamaker closed 4 years ago

shellywanamaker commented 4 years ago

For significant DMRs, determine what genomic features they fall in, perform chi sq stats on sig. DMR vs. background regions, create figure (e.g. stacked bar plot like Clare's 2015 biorxiv paper)

shellywanamaker commented 4 years ago

With this script I created the figure below.

Chi square results are here: https://github.com/shellytrigg/Shelly_Pgenerosa/blob/master/analyses/20200408_anno/chi_table.csv