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htwangtw / adie_ongoingthoughts

ADIE ongoing thought related analysis plan
MIT License
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Who has T1s? #25

Open willstrawson opened 3 years ago

willstrawson commented 3 years ago

Need to know exactly how many people do and don't have structural scans. Will figure this next week :)

willstrawson commented 3 years ago

Number of subs in BIDS directory: 158 Total = 158, ADIE = 103, Controls = 55

Number of subs with baseline/neuro directory: 72 Total = 72, ADIE = 36, Controls = 36

Number of subs with posttraining/neuro directory: 26 Total = 26, ADIE = 26, Controls = 0

Number of T1s in ses-baseline: 65 Total = 65, ADIE = 30, Controls = 35

Number of T1s in posttraining: 4 Total = 4, ADIE = 4, Controls = 0

Number of MW funcs in ses-baseline: 67 Total = 67, ADIE = 32, Controls = 35

Number of MW funcs in posttraining: 23 Total = 23, ADIE = 23, Controls = 0

htwangtw commented 3 years ago

How many subjects are there with at least one T1 scan and both pre-and post-training mind wandering scans?

I don't think the post-training is any useful in this dataset due to the lack of controls. My advice would be use baseline sessions only and focus on individual differences rather than training effects.

willstrawson commented 3 years ago

Number of subjects with (i) both baseline and post-training MW and (ii) at least one T1: 20 Number of subjects with (i) baseline MW and (ii) at least one T1: 66

willstrawson commented 3 years ago

Thanks @htwangtw, I think you're right- i'll focus on the 66 subjects with baseline MW scan and one T1

willstrawson commented 3 years ago

Added /research/cisc2/projects/critchley_adie/BIDS_data/t1_and_mw_neuro_descriptives.csv with relevant json. This contains all the info needed to calculate these stats. Happy to move to a different directory if you think there's some where better to store.

htwangtw commented 3 years ago

Firstly, use tsv instead of csv in BIDS standard dataset. And /research/cisc2/projects/critchley_adie/BIDS_data/ should always resemble BIDS standard so please don't add new files that are not described at this level (see: https://bids-specification.readthedocs.io/en/stable/03-modality-agnostic-files.html) Why not include that information as part of the participants.tsv and edit the participants.json accordingly?

willstrawson commented 3 years ago

Oh yeah that's a good shout, will incorporate this info into the participants.tsv