At the very end of netMHCpan computation, this warning message appears:
Allopipe_test_2/src/tools/netmhc_tables_handler.py:93: DtypeWarning: Columns (0,5,6,7,8,11,12,13,14,17,18,19,20,23,24,25,26,29,30,31,32,35,36,37,38,39,40) have mixed types.Specify dtype option on import or set low_memory=False.
subsets,netmhc_table = find_subsets(netmhc_file)
This does not appear on the tutorial example but on some full VCF files. For instance, size of the output here is [42461 rows x 5 columns].
Specify dtype option on import seems more appropriate than the suggested set low_memory=False which only hides the warning according to this.
At the very end of netMHCpan computation, this warning message appears:
This does not appear on the tutorial example but on some full VCF files. For instance, size of the output here is [42461 rows x 5 columns].
Specify dtype option on importseems more appropriate than the suggestedset low_memory=Falsewhich only hides the warning according to this.