hyattpd Prodigal issues

hyattpd / Prodigal

Prodigal Gene Prediction Software

GNU General Public License v3.0

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issues

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Using different Start Codons

#113 Kash-Pandz closed 2 months ago
0
Broken website link

#112 tvtv195 opened 3 months ago
1
Can I use Prodigal to predict fungal genes?

#111 mojiefei opened 3 months ago
1
prodigal on metatranscriptome assembly

#110 ckeuschn opened 4 months ago
0
Question about gene coordinates

#109 pipparichter opened 6 months ago
0
Fix exception to distance constraints in `dprog.c`

#108 althonos opened 6 months ago
0
Prodigal on short metagenomic reads

#107 EorgeKit opened 8 months ago
0
how to edit the source code to change the length of genes

#106 KeyLllll opened 8 months ago
0
strand orientation

#105 mmpust opened 9 months ago
0
Installation issue

#104 Rr9825 opened 1 year ago
1
only a star in a sequence

#103 jianshu93 opened 1 year ago
0
Avoid skipping candidate RBS positions in `rbs_score`

#102 althonos opened 1 year ago
0
Fix indexing error for reverse strand in `calc_orf_gc`

#101 althonos opened 1 year ago
1
Fix buffer initialization in SD motif detection code

#100 althonos closed 1 year ago
1
Issue with output file content

#99 soluna1 opened 1 year ago
1
The minimum and maximum length of predicted genes

#98 ZhangDengwei closed 1 year ago
0
Please make a release

#97 yurivict opened 1 year ago
2
Fix `score_connection` not extracting maximum frame in overlapping case 2 when in training mode

#96 althonos opened 1 year ago
0
Up to 2x faster prodigal

#95 jaebeom-kim opened 1 year ago
1
Faster prodigal.

#94 jaebeom-kim closed 1 year ago
0
What Details of '-g' parameters are?

#93 timeresistance1996 opened 1 year ago
1
gcc: error: language CORE-AVX2 not recognized

#92 morgansobol opened 1 year ago
1
Prodigal v2.6.3 no stop_type output

#91 Jemimacat opened 2 years ago
1
Differences in gene prediction for forward and reverse sequences

#90 caballero opened 2 years ago
0
Gene calling on very short viral sequences

#89 karchern opened 2 years ago
0
Fix typo in `score_nodes` function of `node.c`

#88 althonos closed 2 years ago
6
Does training prodigal on multiple genomes instead of just one increase accuracy?

#87 avilaHugo closed 11 months ago
1
Predicted CDSs of plasmid AF149757.1 have interior stop codons

#86 vbrover opened 3 years ago
0
-w command for summary statistic returns error

#85 MajaCN opened 3 years ago
3
Virus prediction

#84 maocheng2020 opened 3 years ago
0
fasta files - empty lines handling

#83 GaioTransposon opened 3 years ago
0
Asterix at the end of translated protein sequences

#82 CuriousTim opened 3 years ago
0
real difference between meta and single when the -p

#81 li0604 opened 3 years ago
0
Genes are predicted across N stretches even when providing the -m flag

#80 fpusan opened 4 years ago
3
[Documentations/Examples] Could a few examples be added to the main readme or a linked site?

#79 rubyFeedback opened 4 years ago
0
tinf->rbs_wt hadn't been reset before used

#78 Hocnonsense closed 3 years ago
1
Add continuous integration

#77 richelbilderbeek closed 4 years ago
2
wrong orf of interest

#76 claudelelemaystdenis opened 4 years ago
2
reverse mapping of annotations

#75 noahaus opened 4 years ago
1
Does metaprodigal indicate which codon table was used for each gene?

#74 durrantmm opened 4 years ago
2
explanation of parameters in node.h file

#73 pila76 opened 4 years ago
3
Prodigal still processes gzip'ed files with no error

#72 nick-youngblut opened 4 years ago
3
Prodial .gbk output has no sequences in it.

#71 Rob-murphys opened 4 years ago
1
installation issue

#70 lz870718 closed 4 years ago
2
Parameter of lenght of ORFS

#69 mattoslmp opened 4 years ago
4
can prodigal predict metatranscriptome?

#68 ucassee opened 4 years ago
4
New version discussion: relevant publications

#67 tseemann opened 4 years ago
2
Could I use Prodigal for plant ORFs prediction?

#66 WeiDong-Sanderson closed 4 years ago
1
New version discussion: use of evidence (prokaryotes)

#65 hyattpd opened 4 years ago
12
New version discussion: feature requests

#64 hyattpd opened 4 years ago
16