search

hyunhwan-jeong / SalmonTE

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances
GNU General Public License v3.0
80 stars 23 forks source link

why not integer with --exprtype=count option? #62

Closed Xiaofei-git closed 2 years ago

Xiaofei-git commented 2 years ago

Hi @hyunhwan-jeong , It is highly recommended to set --exprtype=count for differential expression analysis. But, I have question about the output. Why it is not integer for the counts as below for example? Thanks!

Screen Shot 2021-12-01 at 10 37 12 AM
hyunhwan-jeong commented 2 years ago

Hi @Xiaofei-git, this is duplicated with #23. In sum, the count mode would generate 'estimated count' as Salmon did. You may need to round the numbers up for your next step.

Thank you,

Hyun-Hwan Jeong

Xiaofei-git commented 2 years ago

Hi @Xiaofei-git, this is duplicated with #23. In sum, the count mode would generate 'estimated count' as Salmon did. You may need to round the numbers up for your next step.

Thank you,

Hyun-Hwan Jeong

Thanks, @hyunhwan-jeong !