OpenEBench summary workflow: Fix _id of aggregation

[AsierGonzalez]

The _id of the aggregation object contains two hardcoded parts that are outdated. Although they do not cause any issues, it would be good for them to have meaningful and updated values.

This value is given in line 83 of manage_assessment_data.py:

"_id": "TCGA:{}_{}_Aggregation".format(DEFAULT_eventMark, challenge),

• Instead of "TCGA", it should have the id of the community as it happens with the assessments that are included in the same output file. Looking in main.nf It doesn't look like the name/id of the this value is passed to this script as an argument as it does with the call to compute_metrics.py so it would probably need to be added. Another (suboptimal) solution would be to hardcode APAeval in there.
• The variable DEFAULT_eventMark embedded in the id is defined in the script and it contains a date - currently 2018-04-05. This date should be shared by all the runs of the same tool, so it is a configuration parameter that should probably go in main.nf. Again, as a temporary solution it could be hardcoded to something like '2021-06-04'.

[AsierGonzalez]

After checking how the workflows are integrated in the OpenEBench framework I suggest that we go for the simple solution of replacing "TCGA" with "APAeval" in the code, as trying to use the community_id variable has some unwanted consequences that require further changes.

Same for the date, just update it with a more current date of your choice.

[yuukiiwa]

Thanks, Asier! I have changed TCGA to APAeval and the data to 2021-06-04: https://github.com/yuukiiwa/APAeval-summary-workflow/commit/78930e05d0903d2245e2668529eaa93a9c178de7

[AsierGonzalez]

Fantastic, thank you @yuukiiwa!

[AsierGonzalez]

The changes had the desired effect - I'm closing the ticket. Thank you for the great work @yuukiiwa!