iamdonovan
commented
1 year ago Closing this, as it is indicated to be solved by passing the path for QT5 to cmake:
cmake .. -DWITH_QT5=1 -DWERROR=0 -DWITH_CCACHE=OFF -DCMAKE_PREFIX_PATH=/usr/lib/x86_64-linux-gnu/qt5/plugins
[EDIT: Solved] I managed to solve my problem by indicating the correct library to search for qt in the CMAKE command line:
cmake .. -DWITH_QT5=1 -DWERROR=0 -DWITH_CCACHE=OFF -DCMAKE_PREFIX_PATH=/usr/lib/x86_64-linux-gnu/qt5/plugins
Hello,
I have trouble properly installing MicMac. Following the installation guidelines everything works fine until there:
/home/bob/software/micmac/build:~$ cmake .. -DWITH_QT5=1 -DWERROR=0 -DWITH_CCACHE=OFFThe following error is displayed:
CMake Error at /home/avallet/anaconda3/envs/spatial_otb/conda-otb/lib/cmake/Qt5Xml/Qt5XmlConfig.cmake:14 (message): The imported target "Qt5::Xml" references the file
but this file does not exist. Possible reasons include:
The file was deleted, renamed, or moved to another location.
An install or uninstall procedure did not complete successfully.
The installation package was faulty and contained
"/home/avallet/anaconda3/envs/spatial_otb/conda-otb/lib/cmake/Qt5Xml/Qt5XmlConfig.cmake"
but not all the files it references.
Call Stack (most recent call first): /home/avallet/anaconda3/envs/spatial_otb/conda-otb/lib/cmake/Qt5Xml/Qt5XmlConfig.cmake:32 (_qt5_Xml_check_file_exists) /home/avallet/anaconda3/envs/spatial_otb/conda-otb/lib/cmake/Qt5Xml/Qt5XmlConfig.cmake:202 (_populate_Xml_target_properties) CMakeLists.txt:210 (find_package)`
I am not very familiar with this, but from what i understand, the following file "libQt5Xml.so.5.15.2" is not found in the directory it searches in (the library of one of my conda environments). However libQt5Xml.so.5.15.3" (a newer version i assume) exists on my computer in the following directory "/usr/lib/x86_64-linux-gnu".
I have tried to modify my environment variables accordingly by adding
"/usr" to C_MAKE_PREFIX
/usr/lib/x86_64-linux-gnu to LD_LIBRARY_PATH
However the same arror displays when trying to run the cmake command line. I am working with the following distribution: Description: Ubuntu 22.04.2 LTS
Jules Michard, Regards.
I have the following environment variables if this can be of any help:
declare -x BROWSER="/usr/lib/rstudio-server/bin/postback/rpostback-browser" declare -x CLICOLOR_FORCE="1" declare -x CMAKE_PREFIX_PATH="/usr:/home/avallet/anaconda3/envs/spatial_otb/conda-otb:/home/vallet/anaconda3/lib" declare -x CONDA_BACKUP_ADDR2LINE="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-addr2line" declare -x CONDA_BACKUP_AR="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-ar" declare -x CONDA_BACKUP_AS="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-as" declare -x CONDA_BACKUP_BUILD="x86_64-conda-linux-gnu" declare -x CONDA_BACKUP_CC="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-cc" declare -x CONDA_BACKUP_CC_FOR_BUILD="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-cc" declare -x CONDA_BACKUP_CFLAGS="-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/avallet/anaconda3/envs/test-iota/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/avallet/anaconda3/envs/test-iota/include" declare -x CONDA_BACKUP_CMAKE_PREFIX_PATH="/home/avallet/anaconda3/envs/test-iota:/home/avallet/anaconda3/envs/test-iota/x86_64-conda-linux-gnu/sysroot/usr" declare -x CONDA_BACKUP_CONDA_BUILD_SYSROOT="/home/avallet/anaconda3/envs/test-iota/x86_64-conda-linux-gnu/sysroot" declare -x CONDA_BACKUP_CONDA_TOOLCHAIN_BUILD="x86_64-conda-linux-gnu" declare -x CONDA_BACKUP_CONDA_TOOLCHAIN_HOST="x86_64-conda-linux-gnu" declare -x CONDA_BACKUP_CPP="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-cpp" declare -x CONDA_BACKUP_CPPFLAGS="-DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/avallet/anaconda3/envs/test-iota/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/avallet/anaconda3/envs/test-iota/include" declare -x CONDA_BACKUP_CXX="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-c++" declare -x CONDA_BACKUP_CXXFILT="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-c++filt" declare -x CONDA_BACKUP_CXXFLAGS="-fvisibility-inlines-hidden -std=c++17 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/avallet/anaconda3/envs/test-iota/include -fvisibility-inlines-hidden -std=c++17 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/avallet/anaconda3/envs/test-iota/include" declare -x CONDA_BACKUP_CXX_FOR_BUILD="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-c++" declare -x CONDA_BACKUP_DEBUG_CFLAGS="-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem /home/avallet/anaconda3/envs/test-iota/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem /home/avallet/anaconda3/envs/test-iota/include" declare -x CONDA_BACKUP_DEBUG_CPPFLAGS="-D_DEBUG -D_FORTIFY_SOURCE=2 -Og -isystem /home/avallet/anaconda3/envs/test-iota/include -D_DEBUG -D_FORTIFY_SOURCE=2 -Og -isystem /home/avallet/anaconda3/envs/test-iota/include" declare -x CONDA_BACKUP_DEBUG_CXXFLAGS="-fvisibility-inlines-hidden -std=c++17 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem /home/avallet/anaconda3/envs/test-iota/include -fvisibility-inlines-hidden -std=c++17 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem /home/avallet/anaconda3/envs/test-iota/include" declare -x CONDA_BACKUP_ELFEDIT="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-elfedit" declare -x CONDA_BACKUP_GCC="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-gcc" declare -x CONDA_BACKUP_GCC_AR="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-gcc-ar" declare -x CONDA_BACKUP_GCC_NM="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-gcc-nm" declare -x CONDA_BACKUP_GCC_RANLIB="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-gcc-ranlib" declare -x CONDA_BACKUP_GPROF="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-gprof" declare -x CONDA_BACKUP_GXX="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-g++" declare -x CONDA_BACKUP_HOST="x86_64-conda-linux-gnu" declare -x CONDA_BACKUP_LD="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-ld" declare -x CONDA_BACKUP_LDFLAGS="-Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/avallet/anaconda3/envs/test-iota/lib -Wl,-rpath-link,/home/avallet/anaconda3/envs/test-iota/lib -L/home/avallet/anaconda3/envs/test-iota/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/avallet/anaconda3/envs/test-iota/lib -Wl,-rpath-link,/home/avallet/anaconda3/envs/test-iota/lib -L/home/avallet/anaconda3/envs/test-iota/lib" declare -x CONDA_BACKUP_LD_GOLD="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-ld.gold" declare -x CONDA_BACKUP_NM="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-nm" declare -x CONDA_BACKUP_OBJCOPY="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-objcopy" declare -x CONDA_BACKUP_OBJDUMP="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-objdump" declare -x CONDA_BACKUP_RANLIB="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-ranlib" declare -x CONDA_BACKUP_READELF="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-readelf" declare -x CONDA_BACKUP_SIZE="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-size" declare -x CONDA_BACKUP_STRINGS="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-strings" declare -x CONDA_BACKUP_STRIP="/home/avallet/anaconda3/envs/test-iota/bin/x86_64-conda-linux-gnu-strip" declare -x CONDA_BACKUP_build_alias="x86_64-conda-linux-gnu" declare -x CONDA_BACKUP_host_alias="x86_64-conda-linux-gnu" declare -x CONDA_DEFAULT_ENV="spatial_otb" declare -x CONDA_EXE="/home/avallet/anaconda3/bin/conda" declare -x CONDA_PREFIX="/home/avallet/anaconda3/envs/spatial_otb" declare -x CONDA_PREFIX_1="/home/avallet/anaconda3" declare -x CONDA_PROMPT_MODIFIER="(spatial_otb) " declare -x CONDA_PYTHON_EXE="/home/avallet/anaconda3/bin/python" declare -x CONDA_SHLVL="2" declare -x CPL_ZIP_ENCODING="UTF-8" declare -x DISPLAY=":0" declare -x DQt5_ROOT="/usr" declare -x EDITOR="vi" declare -x GDAL_DATA="/home/avallet/anaconda3/envs/spatial_otb/conda-otb/share/gdal" declare -x GDAL_DRIVER_PATH="disable" declare -x GIT_ASKPASS="rpostback-askpass" declare -x GSETTINGS_SCHEMA_DIR="/home/avallet/anaconda3/envs/spatial_otb/share/glib-2.0/schemas" declare -x GSETTINGS_SCHEMA_DIR_CONDA_BACKUP="" declare -x HISTCONTROL="ignoreboth" declare -x HOME="/home/avallet" declare -x LANG="fr_FR.UTF-8" declare -x LC_NUMERIC="C" declare -x LD_LIBRARY_PATH="/usr/lib/R/lib:/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/default-java/lib/server" declare -x LESSCLOSE="/usr/bin/lesspipe %s %s" declare -x LESSOPEN="| /usr/bin/lesspipe %s" declare -x LN_S="ln -s" declare -x LOGNAME="avallet" declare -x LS_COLORS="rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:.tar=01;31:.tgz=01;31:.arc=01;31:.arj=01;31:.taz=01;31:.lha=01;31:.lz4=01;31:.lzh=01;31:.lzma=01;31:.tlz=01;31:.txz=01;31:.tzo=01;31:.t7z=01;31:.zip=01;31:.z=01;31:.dz=01;31:.gz=01;31:.lrz=01;31:.lz=01;31:.lzo=01;31:.xz=01;31:.zst=01;31:.tzst=01;31:.bz2=01;31:.bz=01;31:.tbz=01;31:.tbz2=01;31:.tz=01;31:.deb=01;31:.rpm=01;31:.jar=01;31:.war=01;31:.ear=01;31:.sar=01;31:.rar=01;31:.alz=01;31:.ace=01;31:.zoo=01;31:.cpio=01;31:.7z=01;31:.rz=01;31:.cab=01;31:.wim=01;31:.swm=01;31:.dwm=01;31:.esd=01;31:.jpg=01;35:.jpeg=01;35:.mjpg=01;35:.mjpeg=01;35:.gif=01;35:.bmp=01;35:.pbm=01;35:.pgm=01;35:.ppm=01;35:.tga=01;35:.xbm=01;35:.xpm=01;35:.tif=01;35:.tiff=01;35:.png=01;35:.svg=01;35:.svgz=01;35:.mng=01;35:.pcx=01;35:.mov=01;35:.mpg=01;35:.mpeg=01;35:.m2v=01;35:.mkv=01;35:.webm=01;35:.webp=01;35:.ogm=01;35:.mp4=01;35:.m4v=01;35:.mp4v=01;35:.vob=01;35:.qt=01;35:.nuv=01;35:.wmv=01;35:.asf=01;35:.rm=01;35:.rmvb=01;35:.flc=01;35:.avi=01;35:.fli=01;35:.flv=01;35:.gl=01;35:.dl=01;35:.xcf=01;35:.xwd=01;35:.yuv=01;35:.cgm=01;35:.emf=01;35:.ogv=01;35:.ogx=01;35:.aac=00;36:.au=00;36:.flac=00;36:.m4a=00;36:.mid=00;36:.midi=00;36:.mka=00;36:.mp3=00;36:.mpc=00;36:.ogg=00;36:.ra=00;36:.wav=00;36:.oga=00;36:.opus=00;36:.spx=00;36:.xspf=00;36:" declare -x MAKE="make" declare -x MPLENGINE="tkAgg" declare -x OLDPWD="/usr" declare -x OTB_APPLICATION_PATH="/home/avallet/anaconda3/envs/spatial_otb/conda-otb/lib/otb/applications:/home/avallet/anaconda3/envs/spatial_otb/conda-otb/lib/otb/applications" declare -x PAGER="/usr/bin/pager" declare -x PATH="/home/avallet/anaconda3/envs/spatial_otb/conda-otb/bin:/home/avallet/anaconda3/envs/spatial_otb/bin:/home/avallet/anaconda3/envs/spatial_otb/conda-otb/bin:/home/avallet/anaconda3/envs/spatial_otb/conda-otb/bin:/home/avallet/anaconda3/bin:/home/avallet/anaconda3/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin:/usr/lib/rstudio-server/bin/quarto/bin:/usr/lib/rstudio-server/bin/postback/postback:/usr/lib/rstudio-server/bin/postback/postback:/usr/lib/rstudio-server/bin/postback/postback:/usr/lib/rstudio-server/bin/postback/postback:/usr/lib/rstudio-server/bin/postback/postback:/usr/lib/rstudio-server/bin/postback/postback:/usr/bin:/usr/bin:/usr/bin:/usr/bin:/usr/bin:/usr/bin:/usr/bin:/usr/bin:/usr/bin:/usr/bin:/usr/bin:/usr/bin" declare -x PROJ_DATA="/home/avallet/anaconda3/envs/spatial_otb/share/proj" declare -x PROJ_LIB="/home/avallet/anaconda3/envs/spatial_otb/conda-otb/share/proj:/home/avallet/anaconda3/envs/spatial_otb/share/proj" declare -x PROJ_NETWORK="ON" declare -x PROMPT_COMMAND="echo -ne \"\033]0;\${PWD/#\${HOME}/~}\007\"" declare -x PWD="/home/avallet/micmac/build" declare -x PYTHONPATH="/home/avallet/anaconda3/envs/spatial_otb/conda-otb/lib/python:/home/avallet/anaconda3/envs/spatial_otb/conda-otb/lib/python" declare -x RETICULATE_MINICONDA_ENABLED="" declare -x RETICULATE_PYTHON_FALLBACK="/home/avallet/anaconda3/bin/python" declare -x RMARKDOWN_MATHJAX_PATH="/usr/lib/rstudio-server/resources/mathjax-27" declare -x RSTUDIO="1" declare -x RSTUDIO_CHILD_PROCESS_PANE="terminal" declare -x RSTUDIO_CLI_HYPERLINKS="true" declare -x RSTUDIO_CONSOLE_COLOR="256" declare -x RSTUDIO_CONSOLE_WIDTH="135" declare -x RSTUDIO_HTTP_REFERER="http://157.136.249.10:8080/" declare -x RSTUDIO_PANDOC="/usr/lib/rstudio-server/bin/quarto/bin/tools" declare -x RSTUDIO_PROGRAM_MODE="server" declare -x RSTUDIO_PROJ_NAME="" declare -x RSTUDIO_R_MODULE="" declare -x RSTUDIO_R_PRELAUNCH_SCRIPT="" declare -x RSTUDIO_R_REPO="" declare -x RSTUDIO_R_VERSION_LABEL="" declare -x RSTUDIO_SESSION_ID="5deb81d4" declare -x RSTUDIO_SESSION_PID="1643411" declare -x RSTUDIO_SESSION_STREAM="avallet-d" declare -x RSTUDIO_TERM="9E76B53C" declare -x RSTUDIO_TERMINAL_HOOKS="/usr/lib/rstudio-server/resources/terminal/hooks" declare -x RSTUDIO_USER_IDENTITY="avallet" declare -x RSTUDIO_USER_IDENTITY_DISPLAY="avallet" declare -x RSTUDIO_VERSION="2022.12.0+353" declare -x RSTUDIO_WINUTILS="bin/winutils" declare -x RS_PORT_TOKEN="61e1dc358d8e" declare -x RS_RPOSTBACK_PATH="/usr/lib/rstudio-server/bin/rpostback" declare -x RS_SERVER_RPC_SOCKET_PATH="/var/run/rstudio-server/rstudio-rserver/session-server-rpc.socket" declare -x RS_SERVER_URL="http://157.136.249.10:8080/" declare -x RS_SESSION_TMP_DIR="/var/run/rstudio-server/rstudio-rsession" declare -x RS_SESSION_URL="" declare -x R_BROWSER="xdg-open" declare -x R_BZIPCMD="/bin/bzip2" declare -x R_CLI_HAS_HYPERLINK_IDE_HELP="true" declare -x R_CLI_HAS_HYPERLINK_IDE_RUN="true" declare -x R_CLI_HAS_HYPERLINK_IDE_VIGNETTE="true" declare -x R_DOC_DIR="/usr/share/R/doc" declare -x R_GZIPCMD="/bin/gzip -n" declare -x R_HOME="/usr/lib/R" declare -x R_INCLUDE_DIR="/usr/share/R/include" declare -x R_LIBS_SITE="/usr/local/lib/R/site-library/:/usr/lib/R/site-library:/usr/lib/R/library" declare -x R_LIBS_USER="/home/avallet/R/x86_64-pc-linux-gnu-library/4.2" declare -x R_PAPERSIZE="letter" declare -x R_PAPERSIZE_USER="letter" declare -x R_PDFVIEWER="/usr/bin/xdg-open" declare -x R_PLATFORM="x86_64-pc-linux-gnu" declare -x R_PRINTCMD="/usr/bin/lpr" declare -x R_RD4PDF="times,inconsolata,hyper" declare -x R_SESSION_TMPDIR="/mnt/disk/temp/Rtmpf3otVI" declare -x R_SHARE_DIR="/usr/share/R/share" declare -x R_STRIP_SHARED_LIB="strip --strip-unneeded" declare -x R_STRIP_STATIC_LIB="strip --strip-debug" declare -x R_SYSTEM_ABI="linux,gcc,gxx,gfortran,gfortran" declare -x R_TEXI2DVICMD="/usr/bin/texi2dvi" declare -x R_UNZIPCMD="/usr/bin/unzip" declare -x R_ZIPCMD="/usr/bin/zip" declare -x SED="/bin/sed" declare -x SHLVL="12" declare -x SSH_ASKPASS="rpostback-askpass" declare -x TAR="/bin/tar" declare -x TEMP="/mnt/disk/temp" declare -x TERM="xterm-256color" declare -x TMP="/mnt/disk/temp" declare -x TMPDIR="/mnt/disk/temp" declare -x USER="avallet" declare -x XDG_DATA_DIRS="/usr/local/share:/usr/share:/var/lib/snapd/desktop" declare -x _CE_CONDA="" declare -x _CE_M="" declare -x _REALHOME="/home/avallet" declare -x _R_CHECK_COMPILATION_FLAGSKNOWN="-Wformat -Werror=format-security -Wdate-time"