In some cases it may be useful to allow ARC to be run for a few more iterations or to resume a run which was terminated for some reason. This could be controlled by adding something to the ARC_config.txt (i.e. restart = True).
Do something like the following:
1) Clean up: old assemblies, intermediate mapping results, and other junk (if any)
2) Check for IX_contigs.fasta where X is range(1, numcycles), choose the last one as the targets to start with (ignore the targets in ARC_config.txt).
3) Set up a Config object with all of the necessary pieces (iteration etc)
4) Run the spawner which should kick off mapping etc effectively resuming the process.
In some cases it may be useful to allow ARC to be run for a few more iterations or to resume a run which was terminated for some reason. This could be controlled by adding something to the ARC_config.txt (i.e. restart = True).
Do something like the following:
1) Clean up: old assemblies, intermediate mapping results, and other junk (if any) 2) Check for IX_contigs.fasta where X is range(1, numcycles), choose the last one as the targets to start with (ignore the targets in ARC_config.txt). 3) Set up a Config object with all of the necessary pieces (iteration etc) 4) Run the spawner which should kick off mapping etc effectively resuming the process.