Currently when an assembly is killed for a target, any contigs assembled in a previous iteration for that target will not be written out to the finished folder. It would instead be nice to get the contigs assembled at a previous iteration.
Alternatively mapping coverage could be calculated at each step and used to mask bases/contigs which have higher than expected coverage (indicating repeats) however these calculations would likely be costly and slow ARC down.
samhunter
commented
10 years ago
Currently when an assembly is killed for a target, any contigs assembled in a previous iteration for that target will not be written out to the finished folder. It would instead be nice to get the contigs assembled at a previous iteration.
Alternatively mapping coverage could be calculated at each step and used to mask bases/contigs which have higher than expected coverage (indicating repeats) however these calculations would likely be costly and slow ARC down.