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idekerlab / atgo

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Unnecessary extra edges (?) #18

Open keiono opened 8 years ago

keiono commented 8 years ago

Term 219 is showing multiple interactions of the same type between Atg8 and Snx4 in the interaction table for co-expression and conditional genetic interactions. Just checked the version of the table I sent you and can't account for this on my end. Can you check on this?

keiono commented 8 years ago

Here is the entry in the original file:

grep -e "SNX4" raw_interactions_w_pm_ids.txt | grep "ATG8"
ATG8    SNX4    1.488   0.000   3.274   0.000   0.000   0.000   0.000   0.404   22384390    0   18719252    0   0   0   0   This Study
ATG8    SNX4    1.740   3.123   0.000   0.000   0.000   0.000   0.000   0.463   22558379    20093466    0   0   0   0   0   This Study

Seems the result is correct, but maybe this is a duplicate entry?