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igmhub / cup1d

Cosmology using P1D - small scale clustering of the Lyman alpha forest
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Unclear instructions #63

Open p-slash opened 3 months ago

p-slash commented 3 months ago

tutorial notebooks seem to be deleted from the repo. I cannot figure out what is the actual pipeline script and how to run it. sam_sim.py is broken since SamplerPipeline has moved to another module. When I fixed that, I get the error ModuleNotFoundError: No module named 'GPy'. If Gpy is required please add it to the requirements for the installation. Help appreciated. Thanks.

jchavesmontero commented 3 months ago

As you can see in the lace readme, if you want to use the GP emulators, you need to do

pip install -e .[gpy]

Since this is not mentioned in the cup1d instructions directly (sorry about that), I will update the cup1d readme so it does not happen to people not familiar with lace. The motivation for not installing gpy by default is incompatibilities with old clusters.

jchavesmontero commented 3 months ago

The notebook is here https://github.com/igmhub/cup1d/blob/main/notebooks/tutorials/sample_sim.ipynb, sorry, it got deleted when moving the data

jchavesmontero commented 3 months ago

I have just fixed the issue you mentioned with SamplerPipeline, sam_sim.py should work for you now.