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igordot
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msigdbr
MSigDB gene sets for multiple organisms in a tidy data format
https://igordot.github.io/msigdbr
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msigdb Collection C4 subcategory 3CA unknown
#41
csmoreno
opened
3 weeks ago
0
Checks fail with duckplyr
#40
krlmlr
opened
1 month ago
0
2024 update
#39
jeremymsimon
opened
1 month ago
0
msigdbr and Org.bt.eg.db
#38
wangjiawen2013
closed
2 months ago
7
Missing pathways in results
#37
emmanuel-contreras
closed
2 months ago
1
misgdbr for yeast
#36
HamidKianGaikani
closed
4 months ago
2
C2:CGP pathways being labelled as C2:CP pathways
#35
rauldiul
closed
4 months ago
1
Help with checking a pathway in msigdb.
#34
Chrisdoan9
opened
4 months ago
0
2023 update?
#33
mariecrane
opened
1 year ago
6
Accessing Mouse MSigDB Collections
#32
agdenadel
opened
1 year ago
1
Run KEGG in Seurat object
#31
krigia
closed
1 year ago
1
Inconsistent gene set contents with MSigDB
#30
10adavis
closed
1 year ago
6
Problem with dyplr dependency (I think)
#29
rebeelouise
opened
1 year ago
1
Save the 'entrez_gene' columns in character mode
#28
jokergoo
opened
1 year ago
3
update to 2023.1.Mm and 2023.1.Hs
#27
jliu678
closed
1 year ago
1
getting error
#26
rominaappierdo
closed
1 year ago
8
First release of Mouse MSigDB (v2022.1.Mm)
#25
thecalab
opened
1 year ago
1
number of gene sets
#24
coralzhang
closed
1 year ago
4
extension for gs descriptions
#23
ozturan
opened
1 year ago
0
msigdb - collections expanded
#22
ozturan
closed
1 year ago
1
Add functions update_GO_names, cap_names
#21
TylerSagendorf
opened
2 years ago
4
msigdbr package, category C2, subcategory CP
#20
acaulier
closed
2 years ago
4
Add shorter GO descriptions?
#19
TylerSagendorf
opened
2 years ago
3
Methodology details, and `write.gmt` helper functions?
#18
dereckmezquita
opened
2 years ago
3
MSigDB 7.4
#17
kvittingseerup
closed
3 years ago
4
Skip 7.3 CRAN release and go straight to 7.4(?)
#16
lianos
closed
3 years ago
1
Ensembl Gene IDs
#15
mw55309
closed
3 years ago
3
enricher result is different from msigDB web "investigate Gene Sets"
#14
weiliuyuan
closed
3 years ago
2
`unused argument (.data$species_name == species)` error
#13
katwre
closed
4 years ago
3
CP:WIKIPATHWAY
#12
tuhulab
closed
4 years ago
1
Added values from the EXACT_SOURCE XML tag to the `sources` column
#11
smped
closed
4 years ago
4
Adding the "EXACT_SOURCE" column to the MsigDB C5 entries
#10
AdrijaK
closed
4 years ago
3
Retrieve all C2 canonical pathways using option subcategory = "CP"?
#9
lxhuang7
closed
4 years ago
2
SCSig collection
#8
kokitsuyuzaki
closed
4 years ago
3
Archived genesets
#7
millerh1
closed
5 years ago
2
Update to MSIGDB
#6
millerh1
closed
5 years ago
1
Problem with loading several categories
#5
laurie-tonon
closed
5 years ago
2
No gene sets from KEGG, REACTOME or BIOCARTA
#4
enricoferrero
closed
5 years ago
5
Some orthologs are missing
#3
ashuchawla
closed
5 years ago
3
Fix variable name in vignette
#2
vreuter
closed
6 years ago
1
Function to query MSigDB database version used by msigdbr
#1
marcora
closed
6 years ago
1