search

igvteam / igv-webapp

IGV Web App
https://igv.org/app
MIT License
117 stars 43 forks source link

mm39 genome unable to load #300

Closed siddharthab closed 3 months ago

siddharthab commented 3 months ago

With the latest update to genomes, the chromSizes URL for mm39 is now "https://hgdownload.soe.ucsc.edu/goldenPath/mm39/database/chromInfo.txt.gz", but the loader function does not uncompress the content and thus loads corrupt chromosome names, which crashes later on.

To test, you can open igv.org/app, and try to switch to mm39.

jrobinso commented 3 months ago

Thanks, it should be fixed now.

siddharthab commented 3 months ago

Thanks, can confirm that https://igv.org/genomes/genomes.json now has a working URL.