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igvteam / igv.js

Embeddable genomic visualization component based on the Integrative Genomics Viewer
MIT License
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gCNV track docs #1477

Open jethror1 opened 2 years ago

jethror1 commented 2 years ago

Probably a question for @bw2 , can I check what the correct files from gCNV to generate the bed file are? Is it the standardized denoised copy ratio tsvs? Just wanting to double check I'm using the correct file for confirming what we're seeing is correct.

A more general question, did docs for this get added anywhere? We have had some questions about this and it would be great if we could point people to do some docs.

Thanks!

bw2 commented 2 years ago

@jethror1 yes, these are the denoised copy ratio tsvs.

bw2 commented 2 years ago

I agree it would be nice to add a wiki page. Currently there's an example with track options @ https://github.com/igvteam/igv.js/blob/master/dev/gcnv/gcnv.html#L21-L43

and a summary in the original track PR https://github.com/igvteam/igv.js/pull/1055

Besides the input and config options, are there additional aspects of this track that you would want to see documented?