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ikalvet / heme_binder_diffusion

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ModuleNotFoundError: No module named 'pssm_tools' #4

Closed 0xBytefuzz closed 6 months ago

0xBytefuzz commented 6 months ago

"Thank you very much for developing and writing the design process. I encountered an issue while executing '4.1 Performing ligandMPNN redesign on the 2nd layer residues.' At line 18 of 'setup_ligand_mpnn_2nd_layer.py,' the import statement 'from pssm_tools import make_bias_pssm' is showing an error indicating it cannot be imported. I haven't found any publicly available package containing a function named 'make_bias_pssm.' I'm not sure if there's an issue with my installation, but so far, everything has been running smoothly."

ikalvet commented 6 months ago

Thank you for pointing this bug out! I added the pssm_tools file that was missing. I also realized the setup_ligand_mpnn_2nd_layer.py script had another bug related to the path where it was supposed to look for modules. I fixed that too, along with the bugs you reported related to the pipeline notebook.