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imgag / ngs-bits

Short-read sequencing tools
MIT License
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about CnvHunter #9

Closed nordhuang closed 7 years ago

nordhuang commented 7 years ago

when I run the following command ./CnvHunter -in xxx/S003_cfdna_depth.tsv xxx/S010_gdna_depth.tsv -out xx/cnvhunter.tsv , i always get the following excepthion, Exception: At least n+1 input files are required! Got 2! Location : ../../src/CnvHunter/main.cpp:554..............Help!

marc-sturm commented 7 years ago

Hi, CnvHunter needs al least n (it's a parameter with default value 20) input coverage profiles to calculate the normal distribution for each exon. So you need more Input Files, even when you want to look at two files only. Best, Marc

Am 05.06.2017 09:45 schrieb "nordhuang" notifications@github.com:

when I run the following command ./CnvHunter -in xxx/S003_cfdna_depth.tsv xxx/S010_gdna_depth.tsv -out xx/cnvhunter.tsv , i always get the following excepthion, Exception: At least n+1 input files are required! Got 2! Location : ../../src/CnvHunter/main.cpp:554..............Help!

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imgag commented 7 years ago

Since there was no further feedback, I consider this issue solved.