immunomind immunarch issues

immunomind / immunarch

🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

https://immunarch.com

Apache License 2.0

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issues

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Issue with sequencing clustering with 10x paired BCR data

#418 meredithramba opened 4 days ago
0
All clonal counts are set to 1 when column specified by ".count" is not found

#417 Jia340 opened 1 month ago
0
Exploring heavy chain isotypes from bulk data

#416 hookoop opened 1 month ago
0
Error loading files from TRUST4

#415 Sa753 opened 2 months ago
1
How to deal to the BCR data of smart-seq3 from TRUST4?

#414 ljy-sys opened 2 months ago
0
CDR3 length as proportion instead of clonotype number

#413 Hammer-Q opened 3 months ago
0
filtered_contig_annotations under the data object

#412 daldawood opened 4 months ago
0
Barcodes missing - AIRR file loading issue

#411 martuskaR opened 4 months ago
0
dbAnnotate problems

#410 giuliabriss opened 4 months ago
0
Novaseq X and 10X

#409 katyely opened 5 months ago
0
CDR3 Length paired 10x data

#408 paulrbuckley-kcl opened 6 months ago
0
object 'generate_germline_sequence' not found

#407 royfrancis opened 7 months ago
0
Cellranger Data Loading

#406 bshim181 opened 7 months ago
1
fix "Clonal.count.prop" is not calculated correctly in dXX

#405 chunxuan-hs opened 7 months ago
0
Move data.table to Imports:

#404 MichaelChirico opened 7 months ago
0
Dev

#403 vadimnazarov closed 8 months ago
0
File naming vs loading problems

#402 MikolajKocikowski closed 8 months ago
2
MiXCR import no longer works

#401 MikolajKocikowski closed 8 months ago
4
How to specify groups order?

#400 makarov-ccf opened 8 months ago
0
Found dataframe without required column Cluster

#399 liu9756 opened 8 months ago
0
gene_stats for pig TRAV

#398 Ahmedalaraby20 opened 9 months ago
0
C call with TRUST4 files

#397 psmith20 opened 9 months ago
2
Single cell TCRSeq

#396 synatkeamsk opened 9 months ago
1
Deprecation warning from purrr in function seqCluster

#395 goepp opened 9 months ago
0
Number of sequence provided in .data and .dist are not matching!

#394 Rmulet opened 9 months ago
0
Get Immunarch back to CRAN

#393 vadimnazarov closed 8 months ago
0
Package Installation Error

#392 phoman14 opened 10 months ago
1
Ambiguous Gene Usage in TRBD

#391 ShaowenJ opened 10 months ago
2
Issue with repLoad and repGermline when using O. mykiss IMGT data

#390 bengarcia015 opened 11 months ago
2
Error when generating plot for "Gini coefficient"

#389 KashingTang opened 1 year ago
1
select_()` was deprecated in dplyr 0.7.0.

#388 MuTarr opened 1 year ago
0
Incorrect parsing of AIRR files

#387 DoaneAS opened 1 year ago
1
Loading BD Rhapsody VDJ CDR3 data

#386 yt723 opened 1 year ago
0
Clarification on how matches are determined within trackClonotypes?

#385 jeremymsimon opened 1 year ago
2
Adding a new proportions scale or consistent scale for multiple samples

#384 apal6 closed 1 year ago
2
repLoad failing to load in TRUST4 data

#383 sammurray13 closed 1 year ago
1
Extraction of clonal count from IMGT airr output

#382 AnnaSurace opened 1 year ago
2
Any method to adjust the plots in code?

#381 mingbao96 closed 1 year ago
1
Clarification + Documentation

#380 shreyii opened 1 year ago
3
Problem with importing columns that are mostly NAs

#379 christianwoe opened 1 year ago
3
repFilter by CDR3.nt list

#378 tdfy closed 1 year ago
1
Question for batch correction

#377 jyeoneeee opened 1 year ago
1
repLoad issue

#376 WG20231 opened 1 year ago
1
Summarise / aggregate sample

#375 royfrancis opened 1 year ago
0
RepLoad 10X data

#374 TheRaspberryFox opened 1 year ago
3
Error in `df[, make.names(df_columns)]`

#373 royfrancis closed 1 year ago
1
Question about deletion in nucleotide to amino acid sequence translation

#372 paulovic96 opened 1 year ago
0
Some question about calculation of Chao1.

#371 xxl619755841 opened 1 year ago
0
problem with TABdb annotation

#370 avrilyuki opened 1 year ago
0
Repload not detecting my Mixcr data

#369 Ajay-097 opened 1 year ago
0